FFCP PHASE1:Hg19::chr6:31544284..31544295,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7124 | |EntrezGene=7124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11892 | |HGNC=11892 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003nuj.2_5end | |||
|cluster_id=chr6:31544284..31544295,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_10_at_TNF_5end | |||
|id=chr6:31544284..31544295,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.59e-65!42;CL:0000860!1.81e-60!45;CL:0002009!5.33e-42!65;CL:0000766!1.50e-40!76;CL:0002194!2.45e-40!63;CL:0000576!2.45e-40!63;CL:0000040!2.45e-40!63;CL:0000559!2.45e-40!63;CL:0000738!7.74e-40!140;CL:0002031!5.88e-39!124;CL:0002087!1.30e-38!119;CL:0000557!7.15e-38!71;CL:0000839!1.22e-35!70;CL:0002032!2.92e-34!165;CL:0000837!2.92e-34!165;CL:0000988!1.48e-33!182;CL:0000037!1.82e-32!172;CL:0000566!1.82e-32!172;CL:0000763!4.23e-29!112;CL:0000049!4.23e-29!112;CL:0000134!3.01e-11!358;CL:0002320!7.71e-11!365;CL:0000219!2.11e-09!390;CL:0000048!1.08e-07!430;CL:0000723!1.89e-07!436;CL:0000034!3.88e-07!444;CL:0002393!9.73e-07!9;CL:0002397!9.73e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.18e-63;33!CL:0002057;1.18e-63;33!CL:0000473;5.83e-45;39!CL:0000234;5.83e-45;39!CL:0000576;2.32e-27;48!CL:0000766;8.66e-19;69!CL:0000763;8.11e-14;100!CL:0002087;1.26e-13;104!CL:0000771;2.31e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.41e-55,42;CL:0002057,1.41e-55,42;CL:0000473,1.66e-48,48;CL:0000234,1.66e-48,48;CL:0002194,1.34e-38,59;CL:0000576,1.34e-38,59;CL:0000040,1.34e-38,59;CL:0000559,1.34e-38,59;CL:0002009,2.56e-37,61;CL:0000766,1.05e-36,72;CL:0000839,1.88e-34,66;CL:0000557,6.25e-34,67;CL:0000763,3.32e-24,108;CL:0000049,3.32e-24,108;CL:0002087,2.08e-19,115;CL:0000738,5.24e-19,136;CL:0002031,1.49e-18,120;CL:0002032,7.09e-16,161;CL:0000837,7.09e-16,161;CL:0000037,3.65e-15,168;CL:0000988,2.49e-14,177;CL:0000771,2.15e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.05e-37;42!CL:0000049;5.37e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.89e-33!80;UBERON:0001474!4.75e-30!86;UBERON:0002390!4.14e-28!102;UBERON:0003061!4.14e-28!102;UBERON:0002193!6.29e-25!112;UBERON:0004765!1.55e-24!101;UBERON:0001434!1.55e-24!101;UBERON:0002405!1.10e-20!115;UBERON:0002204!4.62e-12!167;UBERON:0002384!2.78e-10!375;UBERON:0003081!3.33e-10!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.79e-30,76;UBERON:0001474,1.35e-27,82;UBERON:0004765,4.54e-25,90;UBERON:0002405,3.13e-24,93;UBERON:0002390,6.00e-23,98;UBERON:0003061,6.00e-23,98;UBERON:0001434,1.80e-22,100;UBERON:0002193,9.86e-21,108;UBERON:0002204,5.31e-13,167;UBERON:0003081,1.83e-10,203 | |||
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|short_description=p10@TNF | |||
}} | }} |
Latest revision as of 21:25, 17 September 2015
Short description: | p10@TNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_TNF_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_uc003nuj.2_5end |
EntrezGene: | TNF |
HGNC: | 11892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.41e-55 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.41e-55 | 42 |
defensive cell | 1.66e-48 | 48 |
phagocyte | 1.66e-48 | 48 |
monopoietic cell | 1.34e-38 | 59 |
monocyte | 1.34e-38 | 59 |
monoblast | 1.34e-38 | 59 |
promonocyte | 1.34e-38 | 59 |
macrophage dendritic cell progenitor | 2.56e-37 | 61 |
myeloid leukocyte | 1.05e-36 | 72 |
myeloid lineage restricted progenitor cell | 1.88e-34 | 66 |
granulocyte monocyte progenitor cell | 6.25e-34 | 67 |
myeloid cell | 3.32e-24 | 108 |
common myeloid progenitor | 3.32e-24 | 108 |
nongranular leukocyte | 2.08e-19 | 115 |
leukocyte | 5.24e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 1.49e-18 | 120 |
hematopoietic oligopotent progenitor cell | 7.09e-16 | 161 |
hematopoietic multipotent progenitor cell | 7.09e-16 | 161 |
hematopoietic stem cell | 3.65e-15 | 168 |
hematopoietic cell | 2.49e-14 | 177 |
eosinophil | 2.15e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.79e-30 | 76 |
bone element | 1.35e-27 | 82 |
skeletal element | 4.54e-25 | 90 |
immune system | 3.13e-24 | 93 |
hematopoietic system | 6.00e-23 | 98 |
blood island | 6.00e-23 | 98 |
skeletal system | 1.80e-22 | 100 |
hemolymphoid system | 9.86e-21 | 108 |
musculoskeletal system | 5.31e-13 | 167 |
lateral plate mesoderm | 1.83e-10 | 203 |