FFCP PHASE1:Hg19::chr1:36771946..36771979,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79729 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26236 | |||
|TSSclassifier=strong | |||
|UniProt=B5MDU9 | |||
|association_with_transcript=-8bp_to_ENST00000373139_5end | |||
|cluster_id=chr1:36771946..36771979,+ | |||
|description=CAGE_peak_2_at_SH3D21_5end | |||
|id=chr1:36771946..36771979,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.36e-19!254;CL:0002076!8.43e-09!43;CL:0000223!1.04e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.17e-08;42!CL:0002368;2.70e-08;13!CL:0000039;3.83e-08;7!CL:0000586;3.83e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.62e-25,253;CL:0000223,1.98e-11,58;CL:0002076,4.98e-11,42;CL:0002368,2.64e-08,13;CL:0000039,3.87e-08,7;CL:0000586,3.87e-08,7 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.54e-07;29!CL:0000223;8.64e-07;58 | |||
|ontology_enrichment_disease=DOID:305!9.47e-20!106;DOID:0050687!5.25e-14!143 | |||
|ontology_enrichment_disease_v019=DOID:305;6.52e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.35e-22,106;DOID:0050687,6.71e-16,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.43e-17!169;UBERON:0000925!6.43e-17!169;UBERON:0006595!6.43e-17!169;UBERON:0001007!1.90e-12!155;UBERON:0001555!1.90e-12!155;UBERON:0007026!1.90e-12!155;UBERON:0004921!8.15e-12!129;UBERON:0004185!8.15e-12!129;UBERON:0000077!2.22e-11!130;UBERON:0001004!4.08e-10!72;UBERON:0000065!4.30e-09!53;UBERON:0001041!1.94e-08!98;UBERON:0008947!5.15e-08!38;UBERON:0003258!5.15e-08!38;UBERON:0000062!7.88e-08!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;6.25e-09;44!UBERON:0000072;8.71e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.99e-16,160;UBERON:0000925,2.99e-16,160;UBERON:0006595,2.99e-16,160;UBERON:0001007,4.22e-11,145;UBERON:0001555,4.22e-11,145;UBERON:0007026,4.22e-11,145;UBERON:0001004,6.94e-11,74;UBERON:0004921,1.38e-10,118;UBERON:0008947,6.66e-10,38;UBERON:0003258,6.66e-10,38;UBERON:0000065,9.46e-10,54;UBERON:0006554,4.62e-08,47;UBERON:0005631,8.47e-08,14;UBERON:0000158,8.47e-08,14;UBERON:0001008,1.04e-07,48;UBERON:0001041,1.23e-07,87;UBERON:0005153,1.64e-07,37;UBERON:0005911,3.19e-07,82;UBERON:0005177,3.25e-07,101 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0.631719873426831,0.261185628199839,3.93174298402414,6.28021051175185,16.8199856540233,11.078213085595,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.246301768349837,0,0,0.383829398097213,0.464448369948228,7.35536979583142,3.31326510656075,6.65557218300218,0.46480320348181,0.995184627411951,0,1.10799081706375,0.601633342410425,0.651032612147555,3.80656306207871,6.47787332037959,2.57575567634187,1.01778767145695,2.64513160582167,0.970336244751265,2.55671940596253,4.11167888021826,2.78735733805593,1.1507695692886,0.768482119587302,0.47296445977717,0,0.645484683583826,5.41705946377367,1.88242339542605,2.18324920046277,3.14612878223118,0,1.28371610830437,3.19668562899521,0,0.199463657621632,0.426224750532694,0.580418477257168,3.97169657283798,1.24564449799115,0.75374599577023,2.08593167368081,1.52032191293582,3.63239701580021,1.47311054395026,0.949387162322653,0.422510572623884,0,0.209658645508376,0,0,0,0,0,0,0,0,1.77901850772711,0,0,0,0,0,0,0,0,0,0.560508562981536,0,1.180258620683,0.786021525498329,0.822405995998037,2.17342444007882,0.651844533267181,0.473447805734733,0,1.78256731016278,0.589211814949674,0.664601683750863,0.541607727530031,1.79327847615945,1.56071217071854,0.328875809207352,0.552700035571697,0.289803085735052,1.33457906845854,0.267540828089713,1.04535523804977,0.906474741580529,0.766440987203842,1.37450978193052,0.253019692019503,0,0,0.950452044448374,0.301150238155546,0.127986611154418,0,0.473554504088034,0,1.61285394579786,0.267440195783507,1.01377082717959,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.351339142772504,2.68507104770311,15.3004021082868,8.52804218404188,1.9472843619281,1.56716763569341,1.19662164466979,0.715471872916026,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,7.75560528296651,8.72188104285069,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0.151357427644931,0,0.468642863667593,0,0.570471821544449,0,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0.554128230968366,0.438977620880838,0,0,0,0.358779271377724,0,0.211931901159562,0.300091096084402,0,0,0,0.337552664482532,0,0.757301322732344,0,0,0,0,0.169560592310488,2.12586938479627,1.90922284413584,2.58124135850103,5.48881677583179,4.10842281796604,4.99633954338929,3.42081481550722,4.54177531576131,6.20461510428911,0,0,0,0,0,2.24782920075703,2.02301628093722,2.16909926895134,1.7647035637183,1.74303555273925,2.37270619111097,1.8876383142423,2.35465758150415,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0,3.44367627920718,0.171567810298526,7.79227026401241,6.74410519545717,8.84654957222351,2.03694579348765,0,0,0,0.231860809950154,0.117408694235822,0,0,0,9.4824527755113,12.0188062693282,1.47730203652438,2.34004265139238,1.33768046059855,0,0.503946384596579,1.55952606966625,1.25381931783988,2.3250715081117,1.15014803749563,0,0,1.03664057770386,1.29707958075265,0.75745460055828,0.444485260045183,0,0,0,0.308482478109971,2.70308752059526,0.857479297891735,0.224262168690721,0,0,0,3.57656445851882,0,0,0,0.257207374262142,0,0.266422179016099,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0,6.08118903205952,5.02257091432126,6.32501818449095,0.479249710983165,0,0,0,0.61642896765115,0,0,0.788123040807709,1.07813787429759,0.77005821767849,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0.535286966391485,0.315404830067869,0.234282829985426,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.106727557803444,10.0032098577266,16.6435439510497,14.8171243731543,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,3.2632051389738,2.6065841139427,8.74769394891015,0,0.182091168006717,0,0.902399225814824,2.00239876471478,1.56869953835371,2.92278449306521,1.37217117560738,0,0,0,0,1.08378575017541,1.00337954770971,2.03901018436031,0.831076008928724,1.79099803777743,0,0,0,0,0.325378394664303,4.12164046590889,0,0,6.3169209179579,7.15066270640173,0,0,0,0,0.137836572484531,0.214840489736547,0,0.0852266274161009,0,6.7766815298001,5.38132188622297,58.3190096100249,13.1505115112215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,3.17020642346017,0,0,0,0,0.545999645631943,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,1.34710957815717,4.69211592875051,8.71127878890581,4.33061483573184,3.01353760869861,5.05414427002877,2.66058092122005,1.1486170010348,0,0,0,0.238231775457789,0.822724546172388,0.648473311192717,0,0.79312517629427,1.92283328029452,5.77487913158015,8.82144777531714,0.185803175125719,0.721346064882224,1.28055318027145,0,0,0.766021480529467,0.211673582723883,3.57084134302011,0.280797178113459,0.912938716132769,0,0,0,0.481764225311099,0.403599414382095,0,1.37402137902306,0,0,0,0,0,0,0,0,0,14.9712432326576,0.146508179271894,0.242721043499027,0,0,49.1813638559641,2.96964680832639,52.5244800589687,0,0.562677665642051,0,0.16480387422676,0,0.796991953004279,3.31540698637377,1.25966373927138,0,3.93871377475422,0,2.3365771298305,1.07412704805365,0.511572370226872,0.493217028184668,0,0,0,0.0927680981618513,0,5.4689829827899,12.7691599994446,3.62499787717397,1.365521379426,2.2882828526349,5.43691668066254,0,0,1.04174996959975,0,0.482385754501632,1.52581736317083,0.552896299656123,0.295547618953547,0.219385397153973,0,8.78369588955201,1.69290568708354,0,12.2198869325672,6.64206568632314,46.3924278106974,18.8210684241832,0.457987967009312,4.79731298416771,0,0,0,0,0,0,0,0,0,3.4278889713421,1.97894300007517,0.216388639742091,0.995261931078505,9.64187453086397,21.3860550726769,0,0,0,0.067401132980677,0,0,0,5.47860933009851,5.09838797021595,2.36750641709634,4.83962864194656,0.30607276163049,0.31593289814244,0.901940516486955,0.72581733978073,1.32930774541437,0.330991955875499,0.627865836814451,1.19472429772959,0,0,1.90915712168644,13.3269660483554,3.65648667637691,1.92199335066233,2.57979048707425,3.09620260125072,3.80064448848165,2.6276946257027,2.23074737923365,0.0882561266915003,2.03382666702479,0,0,0.443175571691151,14.4708023223754,0.801588202515337,1.92107695265417,8.79162282161373,11.3831429551744,0.80175617316141,1.37275998289572,0.432164393964449,0.372757606696298,14.1416420770077,0,0,0,0,0,0,0,0,17.0876780281554,0.558564802544508,0,0,8.9855550224546,0,0,0.403100834920358,0.360299883542404,6.98975697164723,4.09672547997563,3.13180261848433,4.11161617510528,0.0984274815147488,0,0.795229689809303,0.272406812223151,2.41129722697529,1.2378549293751,3.73896304226267,15.0732507339505,40.2377016370134,0.303747783290123,13.0819528163714,2.91581117007033,8.86482539481468,1.26720403823288,0,15.928961377514,0,0,2.28841683889275,0,0,0,0,0,0,0,0,0,0.517131825446202,0.26446520348538,0.171086837884329,7.75296524548339,1.70859860108311,4.55892484789031,2.07119527673598,0.496166021811951,0.197611631897944,0.487170393523584,14.6818489287142,0,0,1.22538230705385,0,3.45519011750515,1.77213635993397,0.366078794705889,0.500763722825999,0.573409195690071,0.110929051536852,0.620964029413834,0,0.249960815924213,0,0,0,2.81000943484129,3.04334160082733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761610424337591,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,21.0152759547427,2.60994291965212,0,0.694567422971502,0,0,1.23520578864389,0,0.353378291891762,1.15748422962549,1.68942440653073,3.33113974164331,2.41801239211839,0,0.414775308455192,3.3126252502696,3.05589132720735,5.23409261618701,0.982829546539238,0,0.845248493434508,0.19998739585493,0,0,0,0,9.65168603264167,4.97661808026378,0,0.215649622793364,1.10086159299127,0,0.169732529954025,0,0,0.558644917973244,0.318004350653419,1.1829261750188,1.60114149657094,0,0,0.321146125482298,0,0.638535436228605,0,0,0.207471757392654,0,0,2.64998839952769,4.24691004051865,1.83428598521679,0.924205329202706,0,0,0,0.0752103283492573,0,0,13.3572414185525,0.655087670040387,2.06998520703863,0.270150338473579,0,0.206686796501184,0.507326481551255,0,2.19303106742873,1.98484471355718,0,0.638812138197976,0,2.01770233331294,0,0.227662191351298,19.4258190656179,0,0.685952037749674,0.543757863814654,0.460409414939944,2.48207065856333,2.33585943973345,2.19780659981439,0.157115589916002,32.7918431077133,12.7842220871329,0,5.25526856675755,5.78960007830916,1.89616334079272,3.25475991030751,0,0,0.414432328326074,0.51215543128185,6.22133695632683,6.45341038230416,0,0,1.27016115057279,8.2478472675858,0,0,5.92833788528299,1.07965256976767,19.5068679971631,0,0.102662806856247,0,13.5999078056559,0,3.97901550322736,0.83244063544298,2.2589216407792,0.879524133963433,15.700135730934,22.8435507999516,9.17950154116621,0,0,2.12108892391463,0.588925401344836,0,1.2679671827502,0.169927114687817,0.0939839179798536,0.128915775947154,0,0.71421575442263,0,0,0.730336388246517,4.58729283404541,0,0.473314686579554,0.475940431336403,0.872701380680755,7.40637576721561,0,0,0,0.504665699340316,7.2115277496039,4.68784453742317,20.9077100971063,30.997219010805,52.5638825339313,19.3044805255129,0.378893491091197,1.07185652062471,0,0,5.11761556562354,3.80903090341985,0.516711278688049,1.61394257169231,2.13050538903166,13.5568447132491,8.48892193624521,5.660635445321,0.684466602170562,4.3105313929336,2.65372159952903,2.66128285236811,2.44209805832924,2.66818364694289,0,1.43720323370539,0,0.733448665097199,0.406896178315738,0,0.201273793591026,2.56454793842586 | |||
|short_description=p2@SH3D21 | |||
}} |
Latest revision as of 20:50, 17 September 2015
Short description: | p2@SH3D21 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SH3D21_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000373139_5end |
EntrezGene: | SH3D21 |
HGNC: | 26236 |
UniProt: | B5MDU9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.62e-25 | 253 |
endodermal cell | 1.98e-11 | 58 |
endo-epithelial cell | 4.98e-11 | 42 |
respiratory epithelial cell | 2.64e-08 | 13 |
germ line cell | 3.87e-08 | 7 |
germ cell | 3.87e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.99e-16 | 160 |
endoderm | 2.99e-16 | 160 |
presumptive endoderm | 2.99e-16 | 160 |
digestive system | 4.22e-11 | 145 |
digestive tract | 4.22e-11 | 145 |
primitive gut | 4.22e-11 | 145 |
respiratory system | 6.94e-11 | 74 |
subdivision of digestive tract | 1.38e-10 | 118 |
respiratory primordium | 6.66e-10 | 38 |
endoderm of foregut | 6.66e-10 | 38 |
respiratory tract | 9.46e-10 | 54 |
urinary system structure | 4.62e-08 | 47 |
extraembryonic membrane | 8.47e-08 | 14 |
membranous layer | 8.47e-08 | 14 |
renal system | 1.04e-07 | 48 |
foregut | 1.23e-07 | 87 |
epithelial bud | 1.64e-07 | 37 |
endo-epithelium | 3.19e-07 | 82 |
trunk region element | 3.25e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.35e-22 | 106 |
cell type cancer | 6.71e-16 | 143 |