FFCP PHASE1:Hg19::chr4:4388456..4388480,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27065 | |EntrezGene=27065 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-285bp_to_ENST00000513829_5end | |association_with_transcript=-285bp_to_ENST00000513829_5end | ||
|cluster_id=chr4:4388456..4388480,+ | |||
|coexpression_cluster_id=C4416 | |||
|description=CAGE_peak_4_at_D4S234E_5end | |description=CAGE_peak_4_at_D4S234E_5end | ||
|id=chr4:4388456..4388480,+ | |id=chr4:4388456..4388480,+ | ||
|ontology_enrichment_celltype=CL:0000133!1.71e-11!59;CL:0000148!1.72e-11!10;CL:0000541!1.72e-11!10;CL:0000221!1.18e-10!71;CL:0000333!4.55e-10!41;CL:0000047!1.66e-09!8;CL:0002319!2.26e-09!25;CL:0000147!1.61e-08!14;CL:0000540!4.72e-08!6;CL:0000031!4.72e-08!6;CL:0000404!4.72e-08!6;CL:0002322!9.43e-07!5 | |ontology_enrichment_celltype=CL:0000133!1.71e-11!59;CL:0000148!1.72e-11!10;CL:0000541!1.72e-11!10;CL:0000221!1.18e-10!71;CL:0000333!4.55e-10!41;CL:0000047!1.66e-09!8;CL:0002319!2.26e-09!25;CL:0000147!1.61e-08!14;CL:0000540!4.72e-08!6;CL:0000031!4.72e-08!6;CL:0000404!4.72e-08!6;CL:0002322!9.43e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.64e-26;10!CL:0000540;6.23e-21;6!CL:0000404;6.23e-21;6!CL:0002321;1.87e-20;15!CL:0000147;3.55e-18;14!CL:0002322;2.51e-17;5!CL:0000333;3.76e-16;5!CL:0000710;3.44e-12;20!CL:0002577;5.77e-11;3!CL:0002077;1.23e-08;34!CL:0000075;1.39e-08;27!CL:0002319;1.43e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.83e-26,10;CL:0000541,3.83e-26,10;CL:0000133,2.64e-23,59;CL:0000540,3.88e-21,6;CL:0000031,3.88e-21,6;CL:0000404,3.88e-21,6;CL:0000047,1.14e-20,8;CL:0000221,5.65e-20,72;CL:0000147,3.67e-18,14;CL:0002322,3.14e-17,5;CL:0000333,6.56e-16,41;CL:0000710,3.52e-12,20;CL:0002577,6.62e-11,3;CL:0002077,1.07e-09,34;CL:0002319,1.22e-08,25;CL:0000075,1.42e-08,27 | |||
|ontology_enrichment_development_v019=CL:0000031;6.23e-21;6!CL:0000133;6.71e-11;59!CL:0000221;1.81e-08;72 | |||
|ontology_enrichment_disease=DOID:3095!3.39e-07!22;DOID:2994!3.39e-07!22 | |ontology_enrichment_disease=DOID:3095!3.39e-07!22;DOID:2994!3.39e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:169;2.06e-13;6!DOID:3095;4.66e-08;22!DOID:2994;4.66e-08;22!DOID:171;6.39e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.69e-13,6;DOID:3095,4.41e-08,22;DOID:2994,4.41e-08,22;DOID:171,5.71e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.06e-28!94;UBERON:0001016!2.06e-28!94;UBERON:0001017!1.27e-26!82;UBERON:0005743!1.74e-26!86;UBERON:0001049!1.14e-19!57;UBERON:0005068!1.14e-19!57;UBERON:0006241!1.14e-19!57;UBERON:0007135!1.14e-19!57;UBERON:0000955!2.95e-19!69;UBERON:0006238!2.95e-19!69;UBERON:0000924!1.32e-18!173;UBERON:0006601!1.32e-18!173;UBERON:0002616!2.88e-18!59;UBERON:0004121!9.36e-18!169;UBERON:0002346!5.86e-15!90;UBERON:0003075!3.87e-14!86;UBERON:0007284!3.87e-14!86;UBERON:0003080!2.18e-12!42;UBERON:0002780!9.43e-12!41;UBERON:0001890!9.43e-12!41;UBERON:0006240!9.43e-12!41;UBERON:0002020!3.12e-10!34;UBERON:0003528!3.12e-10!34;UBERON:0001869!3.31e-10!32;UBERON:0001893!4.63e-10!34;UBERON:0002791!1.46e-09!33;UBERON:0003076!5.39e-09!15;UBERON:0003057!5.39e-09!15;UBERON:0004733!1.89e-08!12;UBERON:0002028!1.89e-08!12;UBERON:0007277!1.89e-08!12;UBERON:0000956!2.06e-08!25;UBERON:0000203!2.06e-08!25;UBERON:0000033!2.30e-08!123;UBERON:0001950!2.40e-08!20;UBERON:0002619!4.68e-08!22;UBERON:0000153!7.74e-08!129;UBERON:0007811!7.74e-08!129;UBERON:0003056!1.08e-07!61;UBERON:0004732!1.50e-07!13;UBERON:0007023!1.78e-07!115 | |ontology_enrichment_uberon=UBERON:0000073!2.06e-28!94;UBERON:0001016!2.06e-28!94;UBERON:0001017!1.27e-26!82;UBERON:0005743!1.74e-26!86;UBERON:0001049!1.14e-19!57;UBERON:0005068!1.14e-19!57;UBERON:0006241!1.14e-19!57;UBERON:0007135!1.14e-19!57;UBERON:0000955!2.95e-19!69;UBERON:0006238!2.95e-19!69;UBERON:0000924!1.32e-18!173;UBERON:0006601!1.32e-18!173;UBERON:0002616!2.88e-18!59;UBERON:0004121!9.36e-18!169;UBERON:0002346!5.86e-15!90;UBERON:0003075!3.87e-14!86;UBERON:0007284!3.87e-14!86;UBERON:0003080!2.18e-12!42;UBERON:0002780!9.43e-12!41;UBERON:0001890!9.43e-12!41;UBERON:0006240!9.43e-12!41;UBERON:0002020!3.12e-10!34;UBERON:0003528!3.12e-10!34;UBERON:0001869!3.31e-10!32;UBERON:0001893!4.63e-10!34;UBERON:0002791!1.46e-09!33;UBERON:0003076!5.39e-09!15;UBERON:0003057!5.39e-09!15;UBERON:0004733!1.89e-08!12;UBERON:0002028!1.89e-08!12;UBERON:0007277!1.89e-08!12;UBERON:0000956!2.06e-08!25;UBERON:0000203!2.06e-08!25;UBERON:0000033!2.30e-08!123;UBERON:0001950!2.40e-08!20;UBERON:0002619!4.68e-08!22;UBERON:0000153!7.74e-08!129;UBERON:0007811!7.74e-08!129;UBERON:0003056!1.08e-07!61;UBERON:0004732!1.50e-07!13;UBERON:0007023!1.78e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;3.76e-16;5!UBERON:0002410;3.76e-16;5!UBERON:0000010;7.74e-09;8!UBERON:0001987;2.55e-08;4!UBERON:0000922;1.74e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.96e-16,5;UBERON:0002410,2.96e-16,5;UBERON:0001016,5.15e-16,89;UBERON:0001017,5.76e-11,81;UBERON:0000010,6.82e-09,8;UBERON:0001987,2.82e-08,4;UBERON:0004340,2.82e-08,4;UBERON:0004121,4.35e-07,171;UBERON:0000924,4.35e-07,171;UBERON:0006601,4.35e-07,171;UBERON:0003076,6.05e-07,15;UBERON:0003057,6.05e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.873765488520689,0.791300934685361,0,0,0,0,0,0.487932798790507,0.123121058076788,0.408001382488506,0.626909442956176,0.572471974262113,0.136874425072884,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0.267540828089713,1.04535523804977,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.289648807765598,0,0,0.383587685530591,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0.56530794192401,2.51699661725944,0,0.835979866147242,0,0,0,0,0,0,0,1.62028389576352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0.404132016209064,0.817309515567294,0.908144565869588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794025282120147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,5.12289565744301,2.78312513475119,4.53156377191122,3.42081481550722,4.28945446488568,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.548751427043128,2.24803506515239,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,1.46045156871989,0.763976851116555,4.68869788840188,5.13217338068116,1.85089486865982,3.00343057843917,5.43070221998099,0.672786506072164,0,0.07333828582095,0,0,0,0,0,0,0,0,0.714889968290738,0,0,0,0.355391948742546,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0.508189248444927,1.30139853857622,4.63973287666617,7.87326447071439,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,1.21251028578504,4.99306318531491,7.25736703991233,0.248107807818777,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0.362578348774867,0.601519410909855,0,0,0.182091168006717,0.393373244878272,0.451199612907412,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,1.97859703341646,0.823611089208164,0.824686816419805,0,0,0,4.38870365180631,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,1.72202149068492,3.36942951335251,0,0.229723400206959,0,0,0.569647187174163,0,0.411362273086194,0,0,0,5.5548516986286,0,0,1.30062222588003,3.46246111143468,0.142283686696828,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0.994147647766298,0.281338832821026,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,7.98455192004777,0,0,0.724999575434793,0.1137934482855,0,0.236387681767936,3.44743373241465,3.79085997398231,0,0.885741385813839,0.60298219312704,0,1.65868889896837,1.47773809476774,0.438770794307945,0,0.557694977114413,0.0769502585037971,0,0,0.448788222048861,2.7161842980502,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.202203398942031,0,0.468528891450678,0,0.391329237864179,0,0,1.20990716048664,3.97894590119637,0,0,0.207376382794494,0,0.330991955875499,0,0,0.569219092059585,0,0.520679215005393,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0.189932387867636,0,0,0,0.19980960958213,0,0.114536596165916,0,0,0,0.235694034616795,0,0.209205692624666,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0.136203406111576,6.26937279013575,6.46435352006999,5.81616473240859,0,0,0.242998226632099,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.52893040697076,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,2.29363678276028,0.998361463831671,1.05563885000352,1.798532254171,0.74988244777264,0,0.570930667089935,0,2.34167452903441,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0.521745061811734,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0.57785949122191,0.214441591374926,0,0,0,0,0.537266523244462,1.23520578864389,0,0.176689145945881,0.38582807654183,0,0,0,0,0.276516872303462,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,2.42999305476938,1.40172254815686,1.88719130227076,4.36838552768056,0.169732529954025,0.212574920101683,0.495743057036009,2.79322458986622,0,0.867479195013787,0,0,5.2061731150044,0.449604575675217,0,0.159633859057151,0,3.78107544332577,0.691572524642179,0.322951291263702,0,0,0.11796972334774,0,0,0,0,0,0.752103283492572,0,0,0,0,0,0.405225507710368,0,0.206686796501184,0.19024743058172,9.29857175330973,0,0,0,0,0.535701835878287,0,0.606965604236632,1.59363533945908,0.709618961301111,0.345701962667338,0,1.2914249265598,0.460409414939944,0,0,0,0.471346769748006,0,0,0,0,0.285906176706625,0.47404083519818,0.813689977576877,0,0,0.414432328326074,0.3414369541879,0,0,0,0,0,0.9164274741762,0,0,0,0,0,0,0,0,0,1.40363678077263,0.397901550322736,0.356760272332706,1.1294608203896,4.72744222005345,0,0.231522474323834,0.655678681511872,0,0,0,0.3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| ||
|short_description=p4@D4S234E | |short_description=p4@D4S234E | ||
}} | }} |
Latest revision as of 20:49, 17 September 2015
Short description: | p4@D4S234E |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_D4S234E_5end |
Coexpression cluster: | C4416_Melanocyte_Neurons_duodenum_brain_parietal_normal_occipital |
Association with transcript: | -285bp_to_ENST00000513829_5end |
EntrezGene: | D4S234E |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.83e-26 | 10 |
melanoblast | 3.83e-26 | 10 |
neurectodermal cell | 2.64e-23 | 59 |
neuron | 3.88e-21 | 6 |
neuroblast | 3.88e-21 | 6 |
electrically signaling cell | 3.88e-21 | 6 |
neuronal stem cell | 1.14e-20 | 8 |
ectodermal cell | 5.65e-20 | 72 |
pigment cell | 3.67e-18 | 14 |
embryonic stem cell | 3.14e-17 | 5 |
migratory neural crest cell | 6.56e-16 | 41 |
neurecto-epithelial cell | 3.52e-12 | 20 |
placental epithelial cell | 6.62e-11 | 3 |
ecto-epithelial cell | 1.07e-09 | 34 |
neural cell | 1.22e-08 | 25 |
columnar/cuboidal epithelial cell | 1.42e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.96e-16 | 5 |
autonomic nervous system | 2.96e-16 | 5 |
nervous system | 5.15e-16 | 89 |
central nervous system | 5.76e-11 | 81 |
peripheral nervous system | 6.82e-09 | 8 |
placenta | 2.82e-08 | 4 |
allantois | 2.82e-08 | 4 |
ectoderm-derived structure | 4.35e-07 | 171 |
ectoderm | 4.35e-07 | 171 |
presumptive ectoderm | 4.35e-07 | 171 |
posterior neural tube | 6.05e-07 | 15 |
chordal neural plate | 6.05e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.69e-13 | 6 |
germ cell and embryonal cancer | 4.41e-08 | 22 |
germ cell cancer | 4.41e-08 | 22 |
neuroectodermal tumor | 5.71e-08 | 10 |