FFCP PHASE1:Hg19::chr19:3933460..3933476,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:3933460..3933476,+
|short_description=p2@ITGB1BP3
|description=CAGE_peak_2_at_ITGB1BP3_5end
|association_with_transcript=4bp_to_uc010xia.1_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27231 | |EntrezGene=27231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17871 | |HGNC=17871 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=4bp_to_uc010xia.1_5end | |||
|cluster_id=chr19:3933460..3933476,+ | |||
|coexpression_cluster_id=C188 | |||
|description=CAGE_peak_2_at_ITGB1BP3_5end | |||
|id=chr19:3933460..3933476,+ | |||
|ontology_enrichment_celltype=CL:0000039!8.20e-18!7;CL:0000586!8.20e-18!7;CL:0002322!3.84e-15!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.44e-26;5!CL:0000039;3.10e-11;7!CL:0000586;3.10e-11;7!CL:0002321;1.38e-08;15!CL:0000540;3.03e-08;6!CL:0000404;3.03e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.38e-26,5;CL:0000039,3.19e-11,7;CL:0000586,3.19e-11,7;CL:0000540,3.03e-08,6;CL:0000031,3.03e-08,6;CL:0000404,3.03e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0005062;8.09e-12;4!UBERON:0007284;8.09e-12;4!CL:0000031;3.03e-08;6!UBERON:0009117;6.44e-08;10!UBERON:0005564;6.44e-08;10!UBERON:0006603;3.27e-07;65!UBERON:0003104;8.91e-07;31!UBERON:0010227;9.91e-07;1 | |||
|ontology_enrichment_disease=DOID:3095!3.95e-08!22;DOID:2994!3.95e-08!22;DOID:114!5.48e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:114;1.81e-11;2!DOID:3095;2.81e-07;22!DOID:2994;2.81e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.81e-11,2;DOID:3095,2.86e-07,22;DOID:2994,2.86e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.15e-11!115;UBERON:0004151!1.36e-09!3;UBERON:0003978!2.93e-09!3;UBERON:0009751!2.93e-09!3;UBERON:0000946!2.93e-09!3;UBERON:0002523!2.93e-09!3;UBERON:0005983!2.93e-09!3;UBERON:0002165!2.93e-09!3;UBERON:0002062!2.93e-09!3;UBERON:0007280!2.93e-09!3;UBERON:0003103!3.68e-07!69;UBERON:0007100!4.12e-07!27;UBERON:0002081!6.87e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;3.28e-16;3!UBERON:0003978;1.38e-15;3!UBERON:0000946;1.38e-15;3!UBERON:0007100;3.57e-15;25!UBERON:0000922;3.80e-13;49!UBERON:0002081;2.80e-11;2!UBERON:0002133;6.42e-11;2!UBERON:0005090;1.00e-10;2!UBERON:0001630;1.00e-10;2!UBERON:0000341;2.14e-10;2!UBERON:0000948;7.31e-08;22!UBERON:0001723;2.06e-07;3!UBERON:0001033;2.06e-07;3!UBERON:0002079;9.91e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,3.28e-16,3;UBERON:0003978,1.34e-15,3;UBERON:0009751,1.34e-15,3;UBERON:0000946,1.34e-15,3;UBERON:0002523,1.34e-15,3;UBERON:0005983,1.34e-15,3;UBERON:0002165,1.34e-15,3;UBERON:0002062,1.34e-15,3;UBERON:0007280,1.34e-15,3;UBERON:0007100,6.27e-14,27;UBERON:0002081,2.73e-11,2;UBERON:0010227,2.73e-11,2;UBERON:0002133,6.11e-11,2;UBERON:0005090,9.55e-11,2;UBERON:0001630,9.55e-11,2;UBERON:0000341,1.99e-10,2;UBERON:0003103,9.47e-10,68;UBERON:0001723,1.99e-07,3;UBERON:0001033,1.99e-07,3;UBERON:0010056,1.99e-07,3;UBERON:0000948,3.74e-07,24;UBERON:0005498,3.74e-07,24;UBERON:0004140,3.74e-07,24;UBERON:0009881,3.74e-07,24;UBERON:0004141,3.74e-07,24;UBERON:0003084,3.74e-07,24;UBERON:0007005,3.74e-07,24;UBERON:0004139,3.74e-07,24;UBERON:0004291,3.74e-07,24;UBERON:0004797,6.08e-07,7;UBERON:0002079,9.91e-07,1 | |||
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| ||
|short_description=p2@ITGB1BP3 | |||
}} | }} |
Latest revision as of 20:38, 17 September 2015
Short description: | p2@ITGB1BP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGB1BP3_5end |
Coexpression cluster: | C188_left_heart_tongue_skeletal_Skeletal_diaphragm_throat |
Association with transcript: | 4bp_to_uc010xia.1_5end |
EntrezGene: | ITGB1BP3 |
HGNC: | 17871 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.38e-26 | 5 |
germ line cell | 3.19e-11 | 7 |
germ cell | 3.19e-11 | 7 |
neuron | 3.03e-08 | 6 |
neuroblast | 3.03e-08 | 6 |
electrically signaling cell | 3.03e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 3.28e-16 | 3 |
valve | 1.34e-15 | 3 |
cardiac mesenchyme | 1.34e-15 | 3 |
cardial valve | 1.34e-15 | 3 |
tunica intima | 1.34e-15 | 3 |
heart layer | 1.34e-15 | 3 |
endocardium | 1.34e-15 | 3 |
endocardial cushion | 1.34e-15 | 3 |
presumptive endocardium | 1.34e-15 | 3 |
primary circulatory organ | 6.27e-14 | 27 |
cardiac atrium | 2.73e-11 | 2 |
future cardiac atrium | 2.73e-11 | 2 |
atrioventricular valve | 6.11e-11 | 2 |
muscle structure | 9.55e-11 | 2 |
muscle organ | 9.55e-11 | 2 |
throat | 1.99e-10 | 2 |
compound organ | 9.47e-10 | 68 |
tongue | 1.99e-07 | 3 |
gustatory system | 1.99e-07 | 3 |
future tongue | 1.99e-07 | 3 |
heart | 3.74e-07 | 24 |
primitive heart tube | 3.74e-07 | 24 |
primary heart field | 3.74e-07 | 24 |
anterior lateral plate mesoderm | 3.74e-07 | 24 |
heart tube | 3.74e-07 | 24 |
heart primordium | 3.74e-07 | 24 |
cardiac mesoderm | 3.74e-07 | 24 |
cardiogenic plate | 3.74e-07 | 24 |
heart rudiment | 3.74e-07 | 24 |
blood vessel layer | 6.08e-07 | 7 |
left cardiac atrium | 9.91e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.81e-11 | 2 |
germ cell and embryonal cancer | 2.86e-07 | 22 |
germ cell cancer | 2.86e-07 | 22 |