FFCP PHASE1:Hg19::chr3:25469875..25469893,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5915 | |EntrezGene=5915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9865 | |HGNC=9865 | ||
|TSSclassifier=strong | |||
|UniProt=F1D8S6,P10826 | |UniProt=F1D8S6,P10826 | ||
|association_with_transcript=41bp_to_NM_000965,uc003cdh.2_5end | |association_with_transcript=41bp_to_NM_000965,uc003cdh.2_5end | ||
|cluster_id=chr3:25469875..25469893,+ | |||
|description=CAGE_peak_5_at_RARB_5end | |description=CAGE_peak_5_at_RARB_5end | ||
|id=chr3:25469875..25469893,+ | |id=chr3:25469875..25469893,+ | ||
|ontology_enrichment_celltype=CL:0000187!2.63e-11!54;CL:0000393!3.95e-11!60;CL:0000211!3.95e-11!60;CL:0000183!5.37e-11!59;CL:0000222!1.02e-10!119;CL:0000680!4.18e-10!57;CL:0000056!4.18e-10!57;CL:0000355!4.18e-10!57;CL:0000192!7.25e-09!42;CL:0000514!7.25e-09!42;CL:0000359!5.66e-08!32;CL:0000071!7.93e-07!18;CL:0002546!7.93e-07!18 | |ontology_enrichment_celltype=CL:0000187!2.63e-11!54;CL:0000393!3.95e-11!60;CL:0000211!3.95e-11!60;CL:0000183!5.37e-11!59;CL:0000222!1.02e-10!119;CL:0000680!4.18e-10!57;CL:0000056!4.18e-10!57;CL:0000355!4.18e-10!57;CL:0000192!7.25e-09!42;CL:0000514!7.25e-09!42;CL:0000359!5.66e-08!32;CL:0000071!7.93e-07!18;CL:0002546!7.93e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002596;3.88e-10;2!CL:0002589;2.84e-09;2 | |ontology_enrichment_celltype_v019=CL:0002596;3.88e-10;2!CL:0002589;2.84e-09;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002596,2.86e-10,2;CL:0002589,8.07e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;8.01e-10;2 | |ontology_enrichment_development_v019=UBERON:0010122;8.01e-10;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000369;2.27e-17;4!UBERON:0002435;2.27e-17;4!UBERON:0000204;2.27e-17;4!UBERON:0005383;1.33e-13;3!UBERON:0005382;1.33e-13;3!UBERON:0005396;3.88e-10;2!UBERON:0009663;5.74e-10;7!UBERON:0001873;8.01e-10;2!UBERON:0001529;2.84e-09;2!UBERON:0007204;2.84e-09;2!UBERON:0002420;9.20e-08;9!UBERON:0000125;9.20e-08;9!UBERON:0007245;9.20e-08;9!UBERON:0002308;9.20e-08;9!UBERON:0010009;9.20e-08;9!UBERON:0010011;9.20e-08;9!UBERON:0000454;9.20e-08;9!UBERON:0002791;2.64e-07;32!UBERON:0001869;5.96e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0000369;2.27e-17;4!UBERON:0002435;2.27e-17;4!UBERON:0000204;2.27e-17;4!UBERON:0005383;1.33e-13;3!UBERON:0005382;1.33e-13;3!UBERON:0005396;3.88e-10;2!UBERON:0009663;5.74e-10;7!UBERON:0001873;8.01e-10;2!UBERON:0001529;2.84e-09;2!UBERON:0007204;2.84e-09;2!UBERON:0002420;9.20e-08;9!UBERON:0000125;9.20e-08;9!UBERON:0007245;9.20e-08;9!UBERON:0002308;9.20e-08;9!UBERON:0010009;9.20e-08;9!UBERON:0010011;9.20e-08;9!UBERON:0000454;9.20e-08;9!UBERON:0002791;2.64e-07;32!UBERON:0001869;5.96e-07;32 | ||
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|short_description=p5@RARB | |short_description=p5@RARB | ||
}} | }} |
Latest revision as of 20:32, 17 September 2015
Short description: | p5@RARB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RARB_5end |
Coexpression cluster: | NA |
Association with transcript: | 41bp_to_NM_000965, uc003cdh.2_5end |
EntrezGene: | RARB |
HGNC: | 9865 |
UniProt: | F1D8S6P10826 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the carotid artery | 2.86e-10 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 8.07e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 8.44e-18 | 4 |
striatum | 8.44e-18 | 4 |
ventral part of telencephalon | 8.44e-18 | 4 |
future corpus striatum | 8.44e-18 | 4 |
caudate-putamen | 8.94e-14 | 3 |
dorsal striatum | 8.94e-14 | 3 |
carotid artery segment | 2.86e-10 | 2 |
telencephalic nucleus | 3.31e-10 | 7 |
caudate nucleus | 8.62e-10 | 2 |
future caudate nucleus | 8.62e-10 | 2 |
brachiocephalic artery | 8.07e-09 | 2 |
brachiocephalic vasculature | 8.07e-09 | 2 |
pre-chordal neural plate | 1.01e-08 | 61 |
epithelium | 2.63e-08 | 306 |
cell layer | 3.73e-08 | 309 |
basal ganglion | 6.05e-08 | 9 |
neural nucleus | 6.05e-08 | 9 |
nuclear complex of neuraxis | 6.05e-08 | 9 |
nucleus of brain | 6.05e-08 | 9 |
aggregate regional part of brain | 6.05e-08 | 9 |
collection of basal ganglia | 6.05e-08 | 9 |
cerebral subcortex | 6.05e-08 | 9 |
tube | 4.18e-07 | 192 |
systemic artery | 4.68e-07 | 33 |
systemic arterial system | 4.68e-07 | 33 |
regional part of telencephalon | 4.98e-07 | 32 |
cerebral hemisphere | 4.98e-07 | 32 |
unilaminar epithelium | 8.71e-07 | 148 |