FFCP PHASE1:Hg19::chr4:41216619..41216637,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=323 | |EntrezGene=323 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=582 | |HGNC=582 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9Y1,D6RAE0,B4DJ88,B4E2F2,Q92870,E9PG87 | |UniProt=G5E9Y1,D6RAE0,B4DJ88,B4E2F2,Q92870,E9PG87 | ||
|association_with_transcript=0bp_to_ENST00000295974,ENST00000506352,ENST00000508676,NM_001166050,NM_004307,NM_173075,uc003gvl.2,uc003gvm.2,uc003gvn.2_5end | |association_with_transcript=0bp_to_ENST00000295974,ENST00000506352,ENST00000508676,NM_001166050,NM_004307,NM_173075,uc003gvl.2,uc003gvm.2,uc003gvn.2_5end | ||
|cluster_id=chr4:41216619..41216637,- | |||
|coexpression_cluster_id=C2790 | |||
|description=CAGE_peak_3_at_APBB2_5end | |description=CAGE_peak_3_at_APBB2_5end | ||
|id=chr4:41216619..41216637,- | |id=chr4:41216619..41216637,- | ||
|ontology_enrichment_celltype=CL:0000222!1.88e-19!119;CL:0000680!5.98e-13!57;CL:0000056!5.98e-13!57;CL:0000355!5.98e-13!57;CL:0000220!1.98e-12!246;CL:0002321!5.67e-12!248;CL:0000055!5.70e-12!180;CL:0000187!1.36e-11!54;CL:0000183!1.41e-11!59;CL:0000359!7.10e-11!32;CL:0000192!2.16e-10!42;CL:0000514!2.16e-10!42;CL:0000393!2.36e-09!60;CL:0000211!2.36e-09!60;CL:0002139!3.51e-09!24;CL:0000071!5.30e-08!18;CL:0002546!5.30e-08!18;CL:0000076!9.78e-08!62;CL:0000213!2.38e-07!57;CL:0000215!2.38e-07!57 | |ontology_enrichment_celltype=CL:0000222!1.88e-19!119;CL:0000680!5.98e-13!57;CL:0000056!5.98e-13!57;CL:0000355!5.98e-13!57;CL:0000220!1.98e-12!246;CL:0002321!5.67e-12!248;CL:0000055!5.70e-12!180;CL:0000187!1.36e-11!54;CL:0000183!1.41e-11!59;CL:0000359!7.10e-11!32;CL:0000192!2.16e-10!42;CL:0000514!2.16e-10!42;CL:0000393!2.36e-09!60;CL:0000211!2.36e-09!60;CL:0002139!3.51e-09!24;CL:0000071!5.30e-08!18;CL:0002546!5.30e-08!18;CL:0000076!9.78e-08!62;CL:0000213!2.38e-07!57;CL:0000215!2.38e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.64e-10;32!CL:0002139;3.07e-09;24!CL:0000071;7.65e-08;18!CL:0000192;1.21e-07;43!CL:1000413;7.16e-07;9!CL:0000187;9.47e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.69e-20,121;CL:0000680,3.53e-13,58;CL:0000056,3.53e-13,58;CL:0000355,3.53e-13,58;CL:0000187,9.70e-12,55;CL:0000359,2.84e-11,32;CL:0000192,1.31e-10,43;CL:0000514,1.31e-10,43;CL:0002321,6.23e-10,250;CL:0002139,3.19e-09,24;CL:0000393,5.11e-09,61;CL:0000211,5.11e-09,61;CL:0000071,6.51e-08,18;CL:0002546,6.51e-08,18;CL:0000213,6.87e-08,58;CL:0000215,6.87e-08,58;CL:0000076,5.35e-07,63;CL:1000413,6.69e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;7.65e-08;18!CL:0000514;1.21e-07;43!CL:0000355;2.83e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!8.98e-07!14 | |ontology_enrichment_disease=DOID:2394!8.98e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.95e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.28e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000119!6.66e-24!312;UBERON:0000483!1.46e-23!309;UBERON:0000477!5.98e-23!286;UBERON:0002049!2.36e-21!79;UBERON:0007798!2.36e-21!79;UBERON:0004111!5.46e-21!241;UBERON:0000025!5.84e-20!194;UBERON:0004872!7.97e-20!84;UBERON:0000055!1.32e-18!69;UBERON:0000475!3.49e-18!365;UBERON:0001981!1.33e-17!60;UBERON:0007500!1.33e-17!60;UBERON:0004537!1.33e-17!60;UBERON:0006965!1.33e-17!60;UBERON:0000481!7.29e-16!347;UBERON:0000490!1.04e-15!138;UBERON:0004535!1.29e-15!110;UBERON:0001009!1.92e-15!113;UBERON:0000468!6.65e-15!659;UBERON:0003914!8.89e-15!118;UBERON:0001637!1.03e-14!42;UBERON:0003509!1.03e-14!42;UBERON:0004572!1.03e-14!42;UBERON:0000914!5.03e-13!83;UBERON:0002329!5.03e-13!83;UBERON:0003077!5.03e-13!83;UBERON:0003059!5.03e-13!83;UBERON:0007282!5.03e-13!83;UBERON:0009618!5.03e-13!83;UBERON:0007285!5.03e-13!83;UBERON:0004290!2.34e-12!70;UBERON:0000467!3.64e-12!625;UBERON:0000480!6.83e-12!626;UBERON:0001134!8.59e-12!61;UBERON:0002036!8.59e-12!61;UBERON:0003082!8.59e-12!61;UBERON:0002100!2.41e-11!216;UBERON:0002385!2.94e-11!63;UBERON:0001015!2.94e-11!63;UBERON:0000383!2.94e-11!63;UBERON:0005256!5.64e-11!143;UBERON:0000922!8.37e-11!612;UBERON:0002050!9.15e-11!605;UBERON:0005423!9.15e-11!605;UBERON:0004573!9.57e-11!33;UBERON:0004571!9.57e-11!33;UBERON:0000923!1.66e-10!604;UBERON:0005291!1.66e-10!604;UBERON:0006598!1.66e-10!604;UBERON:0002532!1.66e-10!604;UBERON:0000486!6.07e-09!82;UBERON:0002616!1.83e-08!59;UBERON:0003075!2.21e-08!86;UBERON:0007284!2.21e-08!86;UBERON:0001986!5.30e-08!18;UBERON:0004638!5.30e-08!18;UBERON:0004852!5.30e-08!18;UBERON:0000955!5.85e-08!69;UBERON:0006238!5.85e-08!69;UBERON:0001049!8.51e-08!57;UBERON:0005068!8.51e-08!57;UBERON:0006241!8.51e-08!57;UBERON:0007135!8.51e-08!57;UBERON:0000033!1.09e-07!123;UBERON:0000153!2.41e-07!129;UBERON:0007811!2.41e-07!129;UBERON:0003104!2.60e-07!238;UBERON:0009142!2.60e-07!238;UBERON:0005743!3.83e-07!86;UBERON:0004121!4.44e-07!169;UBERON:0002346!4.56e-07!90;UBERON:0001017!6.85e-07!82;UBERON:0000487!7.39e-07!22;UBERON:0000947!7.82e-07!21;UBERON:0010191!7.82e-07!21 | |ontology_enrichment_uberon=UBERON:0000119!6.66e-24!312;UBERON:0000483!1.46e-23!309;UBERON:0000477!5.98e-23!286;UBERON:0002049!2.36e-21!79;UBERON:0007798!2.36e-21!79;UBERON:0004111!5.46e-21!241;UBERON:0000025!5.84e-20!194;UBERON:0004872!7.97e-20!84;UBERON:0000055!1.32e-18!69;UBERON:0000475!3.49e-18!365;UBERON:0001981!1.33e-17!60;UBERON:0007500!1.33e-17!60;UBERON:0004537!1.33e-17!60;UBERON:0006965!1.33e-17!60;UBERON:0000481!7.29e-16!347;UBERON:0000490!1.04e-15!138;UBERON:0004535!1.29e-15!110;UBERON:0001009!1.92e-15!113;UBERON:0000468!6.65e-15!659;UBERON:0003914!8.89e-15!118;UBERON:0001637!1.03e-14!42;UBERON:0003509!1.03e-14!42;UBERON:0004572!1.03e-14!42;UBERON:0000914!5.03e-13!83;UBERON:0002329!5.03e-13!83;UBERON:0003077!5.03e-13!83;UBERON:0003059!5.03e-13!83;UBERON:0007282!5.03e-13!83;UBERON:0009618!5.03e-13!83;UBERON:0007285!5.03e-13!83;UBERON:0004290!2.34e-12!70;UBERON:0000467!3.64e-12!625;UBERON:0000480!6.83e-12!626;UBERON:0001134!8.59e-12!61;UBERON:0002036!8.59e-12!61;UBERON:0003082!8.59e-12!61;UBERON:0002100!2.41e-11!216;UBERON:0002385!2.94e-11!63;UBERON:0001015!2.94e-11!63;UBERON:0000383!2.94e-11!63;UBERON:0005256!5.64e-11!143;UBERON:0000922!8.37e-11!612;UBERON:0002050!9.15e-11!605;UBERON:0005423!9.15e-11!605;UBERON:0004573!9.57e-11!33;UBERON:0004571!9.57e-11!33;UBERON:0000923!1.66e-10!604;UBERON:0005291!1.66e-10!604;UBERON:0006598!1.66e-10!604;UBERON:0002532!1.66e-10!604;UBERON:0000486!6.07e-09!82;UBERON:0002616!1.83e-08!59;UBERON:0003075!2.21e-08!86;UBERON:0007284!2.21e-08!86;UBERON:0001986!5.30e-08!18;UBERON:0004638!5.30e-08!18;UBERON:0004852!5.30e-08!18;UBERON:0000955!5.85e-08!69;UBERON:0006238!5.85e-08!69;UBERON:0001049!8.51e-08!57;UBERON:0005068!8.51e-08!57;UBERON:0006241!8.51e-08!57;UBERON:0007135!8.51e-08!57;UBERON:0000033!1.09e-07!123;UBERON:0000153!2.41e-07!129;UBERON:0007811!2.41e-07!129;UBERON:0003104!2.60e-07!238;UBERON:0009142!2.60e-07!238;UBERON:0005743!3.83e-07!86;UBERON:0004121!4.44e-07!169;UBERON:0002346!4.56e-07!90;UBERON:0001017!6.85e-07!82;UBERON:0000487!7.39e-07!22;UBERON:0000947!7.82e-07!21;UBERON:0010191!7.82e-07!21 | ||
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| ||
|short_description=p3@APBB2 | |short_description=p3@APBB2 | ||
}} | }} |
Latest revision as of 19:12, 17 September 2015
Short description: | p3@APBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_APBB2_5end |
Coexpression cluster: | C2790_anaplastic_mesothelioma_corpus_optic_substantia_thalamus_granulosa |
Association with transcript: | 0bp_to_ENST00000295974, ENST00000506352, ENST00000508676, NM_001166050, NM_004307, NM_173075, uc003gvl.2, uc003gvm.2, uc003gvn.2_5end |
EntrezGene: | APBB2 |
HGNC: | 582 |
UniProt: | G5E9Y1D6RAE0B4DJ88B4E2F2Q92870E9PG87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.69e-20 | 121 |
muscle precursor cell | 3.53e-13 | 58 |
myoblast | 3.53e-13 | 58 |
multi-potent skeletal muscle stem cell | 3.53e-13 | 58 |
muscle cell | 9.70e-12 | 55 |
vascular associated smooth muscle cell | 2.84e-11 | 32 |
smooth muscle cell | 1.31e-10 | 43 |
smooth muscle myoblast | 1.31e-10 | 43 |
embryonic cell | 6.23e-10 | 250 |
endothelial cell of vascular tree | 3.19e-09 | 24 |
electrically responsive cell | 5.11e-09 | 61 |
electrically active cell | 5.11e-09 | 61 |
blood vessel endothelial cell | 6.51e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.51e-08 | 18 |
lining cell | 6.87e-08 | 58 |
barrier cell | 6.87e-08 | 58 |
squamous epithelial cell | 5.35e-07 | 63 |
endothelial cell of artery | 6.69e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.28e-07 | 14 |