FFCP PHASE1:Hg19::chr4:40631592..40631602,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54502 | |EntrezGene=54502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30358 | |HGNC=30358 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-46bp_to_ENST00000513044_5end | |association_with_transcript=-46bp_to_ENST00000513044_5end | ||
|cluster_id=chr4:40631592..40631602,- | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_26_at_RBM47_5end | |description=CAGE_peak_26_at_RBM47_5end | ||
|id=chr4:40631592..40631602,- | |id=chr4:40631592..40631602,- | ||
|ontology_enrichment_celltype=CL:0000860!3.38e-41!45;CL:0002057!8.24e-37!42;CL:0002009!1.04e-32!65;CL:0002194!7.61e-32!63;CL:0000576!7.61e-32!63;CL:0000040!7.61e-32!63;CL:0000559!7.61e-32!63;CL:0000766!4.09e-30!76;CL:0000557!4.58e-29!71;CL:0000839!1.19e-27!70;CL:0000763!1.85e-19!112;CL:0000049!1.85e-19!112;CL:0002087!3.72e-16!119;CL:0000738!4.14e-16!140;CL:0002031!3.72e-15!124;CL:0002032!5.50e-12!165;CL:0000837!5.50e-12!165;CL:0000037!8.09e-12!172;CL:0000566!8.09e-12!172;CL:0000988!1.47e-10!182 | |ontology_enrichment_celltype=CL:0000860!3.38e-41!45;CL:0002057!8.24e-37!42;CL:0002009!1.04e-32!65;CL:0002194!7.61e-32!63;CL:0000576!7.61e-32!63;CL:0000040!7.61e-32!63;CL:0000559!7.61e-32!63;CL:0000766!4.09e-30!76;CL:0000557!4.58e-29!71;CL:0000839!1.19e-27!70;CL:0000763!1.85e-19!112;CL:0000049!1.85e-19!112;CL:0002087!3.72e-16!119;CL:0000738!4.14e-16!140;CL:0002031!3.72e-15!124;CL:0002032!5.50e-12!165;CL:0000837!5.50e-12!165;CL:0000037!8.09e-12!172;CL:0000566!8.09e-12!172;CL:0000988!1.47e-10!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.67e-80;33!CL:0002057;1.67e-80;33!CL:0000473;5.66e-55;39!CL:0000234;5.66e-55;39!CL:0000576;2.62e-40;48!CL:0000766;5.89e-24;69!CL:0002087;8.54e-13;104!CL:0000763;8.65e-13;100!CL:0000511;1.83e-09;1!CL:0002625;1.83e-09;1!CL:0000216;1.83e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.13e-76,42;CL:0002057,4.13e-76,42;CL:0000473,3.24e-66,48;CL:0000234,3.24e-66,48;CL:0002194,2.35e-52,59;CL:0000576,2.35e-52,59;CL:0000040,2.35e-52,59;CL:0000559,2.35e-52,59;CL:0002009,1.44e-50,61;CL:0000766,4.45e-47,72;CL:0000839,1.47e-46,66;CL:0000557,7.90e-46,67;CL:0000763,1.88e-30,108;CL:0000049,1.88e-30,108;CL:0002087,1.55e-25,115;CL:0002031,2.40e-24,120;CL:0000738,1.52e-23,136;CL:0002032,2.18e-19,161;CL:0000837,2.18e-19,161;CL:0000037,1.92e-18,168;CL:0000988,2.46e-17,177;CL:0000511,1.36e-09,1;CL:0002625,1.36e-09,1;CL:0000216,1.36e-09,1;CL:0000134,6.61e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.91e-52;42!UBERON:0008801;1.83e-09;1!CL:0000049;1.70e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;1.83e-09;1!DOID:10165;1.83e-09;1!DOID:1798;1.83e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.48e-09,1;DOID:10165,1.48e-09,1;DOID:1798,1.48e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.25e-24!80;UBERON:0001474!3.40e-22!86;UBERON:0004765!4.97e-20!101;UBERON:0001434!4.97e-20!101;UBERON:0002390!1.65e-19!102;UBERON:0003061!1.65e-19!102;UBERON:0002193!7.07e-18!112;UBERON:0002405!4.36e-17!115;UBERON:0002204!1.51e-09!167;UBERON:0002394!3.16e-08!4;UBERON:0003928!3.16e-08!4;UBERON:0002294!6.08e-07!7;UBERON:0001173!6.08e-07!7;UBERON:0004912!6.08e-07!7 | |ontology_enrichment_uberon=UBERON:0002371!1.25e-24!80;UBERON:0001474!3.40e-22!86;UBERON:0004765!4.97e-20!101;UBERON:0001434!4.97e-20!101;UBERON:0002390!1.65e-19!102;UBERON:0003061!1.65e-19!102;UBERON:0002193!7.07e-18!112;UBERON:0002405!4.36e-17!115;UBERON:0002204!1.51e-09!167;UBERON:0002394!3.16e-08!4;UBERON:0003928!3.16e-08!4;UBERON:0002294!6.08e-07!7;UBERON:0001173!6.08e-07!7;UBERON:0004912!6.08e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001831;1.83e-09;1!UBERON:0001136;1.83e-09;1!UBERON:0001343;1.83e-09;1!UBERON:0004910;1.83e-09;1!UBERON:0004813;1.83e-09;1!UBERON:0001567;1.83e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.20e-40,76;UBERON:0001474,5.64e-37,82;UBERON:0004765,1.92e-33,90;UBERON:0002405,2.84e-32,93;UBERON:0002390,1.76e-30,98;UBERON:0003061,1.76e-30,98;UBERON:0001434,8.20e-30,100;UBERON:0002193,2.19e-27,108;UBERON:0002204,1.32e-16,167;UBERON:0003081,1.14e-14,203;UBERON:0001136,1.36e-09,1;UBERON:0001343,1.36e-09,1;UBERON:0004910,1.36e-09,1;UBERON:0005154,1.36e-09,1;UBERON:0005295,1.36e-09,1;UBERON:0004813,1.36e-09,1;UBERON:0005297,1.36e-09,1;UBERON:0005294,1.36e-09,1;UBERON:0010141,1.36e-09,1;UBERON:0005891,1.36e-09,1;UBERON:0001831,2.26e-09,1;UBERON:0001567,2.26e-09,1;UBERON:0008801,2.26e-09,1;UBERON:0000926,3.34e-08,315;UBERON:0004120,3.34e-08,315;UBERON:0006603,3.34e-08,315 | |||
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| ||
|short_description=p26@RBM47 | |short_description=p26@RBM47 | ||
}} | }} |
Latest revision as of 18:49, 17 September 2015
Short description: | p26@RBM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_RBM47_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -46bp_to_ENST00000513044_5end |
EntrezGene: | RBM47 |
HGNC: | 30358 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.13e-76 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.13e-76 | 42 |
defensive cell | 3.24e-66 | 48 |
phagocyte | 3.24e-66 | 48 |
monopoietic cell | 2.35e-52 | 59 |
monocyte | 2.35e-52 | 59 |
monoblast | 2.35e-52 | 59 |
promonocyte | 2.35e-52 | 59 |
macrophage dendritic cell progenitor | 1.44e-50 | 61 |
myeloid leukocyte | 4.45e-47 | 72 |
myeloid lineage restricted progenitor cell | 1.47e-46 | 66 |
granulocyte monocyte progenitor cell | 7.90e-46 | 67 |
myeloid cell | 1.88e-30 | 108 |
common myeloid progenitor | 1.88e-30 | 108 |
nongranular leukocyte | 1.55e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 2.40e-24 | 120 |
leukocyte | 1.52e-23 | 136 |
hematopoietic oligopotent progenitor cell | 2.18e-19 | 161 |
hematopoietic multipotent progenitor cell | 2.18e-19 | 161 |
hematopoietic stem cell | 1.92e-18 | 168 |
hematopoietic cell | 2.46e-17 | 177 |
androgen binding protein secreting cell | 1.36e-09 | 1 |
seminiferous tubule epithelial cell | 1.36e-09 | 1 |
Sertoli cell | 1.36e-09 | 1 |
mesenchymal cell | 6.61e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.20e-40 | 76 |
bone element | 5.64e-37 | 82 |
skeletal element | 1.92e-33 | 90 |
immune system | 2.84e-32 | 93 |
hematopoietic system | 1.76e-30 | 98 |
blood island | 1.76e-30 | 98 |
skeletal system | 8.20e-30 | 100 |
hemolymphoid system | 2.19e-27 | 108 |
musculoskeletal system | 1.32e-16 | 167 |
lateral plate mesoderm | 1.14e-14 | 203 |
mesothelium | 1.36e-09 | 1 |
seminiferous tubule of testis | 1.36e-09 | 1 |
epithelium of male gonad | 1.36e-09 | 1 |
epithelial cord | 1.36e-09 | 1 |
sex cord | 1.36e-09 | 1 |
seminiferous tubule epithelium | 1.36e-09 | 1 |
testis sex cord | 1.36e-09 | 1 |
genital ridge | 1.36e-09 | 1 |
primitive sex cord of indifferent gonad | 1.36e-09 | 1 |
coelomic epithelium | 1.36e-09 | 1 |
parotid gland | 2.26e-09 | 1 |
cheek | 2.26e-09 | 1 |
parotid gland primordium | 2.26e-09 | 1 |
mesoderm | 3.34e-08 | 315 |
mesoderm-derived structure | 3.34e-08 | 315 |
presumptive mesoderm | 3.34e-08 | 315 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.48e-09 | 1 |
endocrine pancreas cancer | 1.48e-09 | 1 |
pancreatic endocrine carcinoma | 1.48e-09 | 1 |