FFCP PHASE1:Hg19::chr12:20523085..20523111,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5139 | |EntrezGene=5139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8778 | |HGNC=8778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=26bp_to_ENST00000542675_5end | |association_with_transcript=26bp_to_ENST00000542675_5end | ||
|cluster_id=chr12:20523085..20523111,+ | |||
|coexpression_cluster_id=C1012 | |coexpression_cluster_id=C1012 | ||
|description=CAGE_peak_7_at_PDE3A_5end | |description=CAGE_peak_7_at_PDE3A_5end | ||
|id=chr12:20523085..20523111,+ | |id=chr12:20523085..20523111,+ | ||
|ontology_enrichment_celltype=CL:0002274!1.78e-07!5;CL:0000457!1.78e-07!5;CL:0002191!1.78e-07!5;CL:0000097!1.78e-07!5;CL:0000831!1.78e-07!5;CL:0002028!1.78e-07!5 | |ontology_enrichment_celltype=CL:0002274!1.78e-07!5;CL:0000457!1.78e-07!5;CL:0002191!1.78e-07!5;CL:0000097!1.78e-07!5;CL:0000831!1.78e-07!5;CL:0002028!1.78e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000097;8.60e-20;5!CL:0000163;6.87e-11;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,3.11e-20,5;CL:0002028,3.11e-20,5;CL:0000163,3.98e-11,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.05e-17;29!UBERON:0005062;3.59e-10;4!UBERON:0007284;3.59e-10;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;5.62e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,5.29e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.61e-22!115;UBERON:0001737!6.13e-12!9;UBERON:0001009!1.75e-07!113;UBERON:0000468!3.59e-07!659 | |ontology_enrichment_uberon=UBERON:0007023!7.61e-22!115;UBERON:0001737!6.13e-12!9;UBERON:0001009!1.75e-07!113;UBERON:0000468!3.59e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.66e-34;9!UBERON:0001557;2.66e-34;9!UBERON:0004151;1.73e-13;3!UBERON:0003978;2.05e-13;3!UBERON:0000946;2.05e-13;3!UBERON:0007100;1.72e-12;25!UBERON:0000072;9.48e-12;37!UBERON:0002081;2.47e-09;2!UBERON:0002133;2.47e-09;2!UBERON:0000065;5.21e-09;44!UBERON:0002108;8.37e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.30e-34,9;UBERON:0001557,1.97e-15,19;UBERON:0004151,1.42e-13,3;UBERON:0003978,1.90e-13,3;UBERON:0009751,1.90e-13,3;UBERON:0000946,1.90e-13,3;UBERON:0002523,1.90e-13,3;UBERON:0005983,1.90e-13,3;UBERON:0002165,1.90e-13,3;UBERON:0002062,1.90e-13,3;UBERON:0007280,1.90e-13,3;UBERON:0008947,1.52e-12,38;UBERON:0003258,1.52e-12,38;UBERON:0007100,1.97e-11,27;UBERON:0004921,8.85e-10,118;UBERON:0000072,1.14e-09,47;UBERON:0002081,2.06e-09,2;UBERON:0010227,2.06e-09,2;UBERON:0002133,2.33e-09,2;UBERON:0000065,4.16e-08,54;UBERON:0001041,4.42e-08,87;UBERON:0002108,1.03e-07,4;UBERON:0001007,4.02e-07,145;UBERON:0001555,4.02e-07,145;UBERON:0007026,4.02e-07,145;UBERON:0004119,7.77e-07,160;UBERON:0000925,7.77e-07,160;UBERON:0006595,7.77e-07,160 | |||
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|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.144846518960824,0.795285947051099,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.417989933073621,0,0,0.33472061276467,0,0,0,0,0,0.267899184852239,0,0.225222960966644,0,0,0.366403487860815,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0.311211035399766,0,0.326923806226917,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,1.18306800039844,1.34867752062481,1.44606617930089,1.32352767278873,1.30727666455444,2.37270619111097,1.48314438976181,2.74710051175484,1.92373578473195,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,2.95597942737566,1.93706554829097,1.03664057770386,1.8735593944205,1.76739406796932,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,1.42977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0.414415513436035,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0.256278298511402,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.193341436584244,0,0,0,0.322260734604821,0,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,1.01489521846434,0,0.569647187174163,0.238231775457789,0.411362273086194,2.59389324477087,1.08006287447623,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08182271390393,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0.276283915531148,0,0,0,0.311039587661807,0,7.51888933637558,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,1.19832309870889,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0.216388639742091,1.99052386215701,0.884575645033392,0,0,0.123563938946503,0,0.067401132980677,0.802577647298789,0,0,0,0,0,2.41981432097328,0,0.568679216656392,0,0,0,0,0,0,0,0,0.520679215005393,0,0,0,0.171986032471617,4.35403490800883,5.18934151311917,3.61308011034121,0.290967049465258,0,0.225980740780532,0,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,5.30636562417283,5.49985017628041,1.43574604915363,5.59101201397175,12.018329347824,5.13294352116307,2.14987111957524,0,0,0,0,0,0.492137407573744,0.169346664131569,0,0,0.160753148465019,0.137539436597234,0,0,0,0.0607495566580247,0,0.0788057072991982,0.629455057619977,0,1.43429871466276,0,5.71756261098694,7.94510364438518,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0.258565912723101,0,1.02652102730598,0,0.533937062838473,0.628817220398664,0,0,0,0,0,0,0.5013797880454,0,0,0,0,0.122026264901963,0,0.573409195690071,0.110929051536852,0.310482014706917,0,0,0,2.28372266835974,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0.295710299979268,0.159296767163702,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0.109209638192014,0,0,0.123935764259002,0,0.318004350653419,0,0,0,0,0.256916900385838,1.41696576325585,0.319267718114302,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0.376051641746286,0,1.56302802246618,0,0,0,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0,0.280272163313789,1.82631744101899,0,0,0.571812353413251,0,0,0.173858272302579,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,2.97300226943921,0,0,0,1.46630900405095,2.18559560503957,0,0,0,0.196308467114945,0,0,0,0.281951753939561,0.45120521581504,0,0,0,0,1.46067277649303,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0.218531143927391,0.253397002022874,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0.213233981900981,0,0,0,0,0.190941474834495,0,0,0.342233301085281,0,0.215166616178029,0.99798106963804,0,0,0,0,0,0.488965776731466,0.406896178315738,0,0.402547587182052,0 | ||
|short_description=p7@PDE3A | |short_description=p7@PDE3A | ||
}} | }} |
Latest revision as of 18:49, 17 September 2015
Short description: | p7@PDE3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PDE3A_5end |
Coexpression cluster: | C1012_heart_left_bile_Mast_epitheloid_aorta_umbilical |
Association with transcript: | 26bp_to_ENST00000542675_5end |
EntrezGene: | PDE3A |
HGNC: | 8778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 3.11e-20 | 5 |
basophil mast progenitor cell | 3.11e-20 | 5 |
endocrine cell | 3.98e-11 | 9 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.30e-34 | 9 |
upper respiratory tract | 1.97e-15 | 19 |
cardiac chamber | 1.42e-13 | 3 |
valve | 1.90e-13 | 3 |
cardiac mesenchyme | 1.90e-13 | 3 |
cardial valve | 1.90e-13 | 3 |
tunica intima | 1.90e-13 | 3 |
heart layer | 1.90e-13 | 3 |
endocardium | 1.90e-13 | 3 |
endocardial cushion | 1.90e-13 | 3 |
presumptive endocardium | 1.90e-13 | 3 |
respiratory primordium | 1.52e-12 | 38 |
endoderm of foregut | 1.52e-12 | 38 |
primary circulatory organ | 1.97e-11 | 27 |
subdivision of digestive tract | 8.85e-10 | 118 |
segment of respiratory tract | 1.14e-09 | 47 |
cardiac atrium | 2.06e-09 | 2 |
future cardiac atrium | 2.06e-09 | 2 |
atrioventricular valve | 2.33e-09 | 2 |
respiratory tract | 4.16e-08 | 54 |
foregut | 4.42e-08 | 87 |
small intestine | 1.03e-07 | 4 |
digestive system | 4.02e-07 | 145 |
digestive tract | 4.02e-07 | 145 |
primitive gut | 4.02e-07 | 145 |
endoderm-derived structure | 7.77e-07 | 160 |
endoderm | 7.77e-07 | 160 |
presumptive endoderm | 7.77e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
heart disease | 5.29e-10 | 2 |