FFCP PHASE1:Hg19::chr13:51913819..51913838,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:51913819..51913838,+
|short_description=p1@SERPINE3
|description=CAGE_peak_1_at_SERPINE3_5end
|association_with_transcript=0bp_to_ENST00000419898_5end
|E...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=647174 | |EntrezGene=647174 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24774 | |HGNC=24774 | ||
|TSSclassifier=strong | |||
|UniProt=E5RG55 | |UniProt=E5RG55 | ||
|association_with_transcript=0bp_to_ENST00000419898_5end | |||
|cluster_id=chr13:51913819..51913838,+ | |||
|coexpression_cluster_id=C753 | |||
|description=CAGE_peak_1_at_SERPINE3_5end | |||
|id=chr13:51913819..51913838,+ | |||
|ontology_enrichment_celltype=CL:0002586!8.98e-37!3;CL:0000149!9.01e-28!4;CL:0000147!3.59e-21!14;CL:0002598!7.68e-13!1;CL:0002322!2.98e-10!5;CL:0000077!3.73e-10!19;CL:0000325!1.49e-07!39;CL:0002195!5.28e-07!2;CL:0002571!5.28e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002586;2.28e-85;3!CL:0000149;2.61e-64;4!CL:0000147;4.77e-19;14!CL:0000077;7.18e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.28e-85,3;CL:0000149,2.61e-64,4;CL:0000147,4.77e-19,14;CL:0000077,7.18e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.99e-11;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!9.65e-39!5;UBERON:0005388!9.65e-39!5;UBERON:0001802!9.65e-39!5;UBERON:0001781!8.98e-37!3;UBERON:0001782!8.98e-37!3;UBERON:0005424!8.98e-37!3;UBERON:0000970!5.37e-15!20;UBERON:0002104!2.80e-14!21;UBERON:0000020!4.93e-13!23;UBERON:0001301!5.38e-13!1;UBERON:0001032!1.73e-12!24;UBERON:0004456!1.73e-12!24;UBERON:0007625!1.71e-10!11;UBERON:0000019!2.04e-10!19;UBERON:0000047!2.04e-10!19;UBERON:0004088!2.04e-10!19;UBERON:0003072!2.04e-10!19;UBERON:0003071!2.04e-10!19;UBERON:0004128!2.04e-10!19;UBERON:0001456!1.92e-09!21;UBERON:0005085!6.97e-07!29 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.41e-90;5!UBERON:0005388;1.41e-90;5!UBERON:0001802;1.41e-90;5!UBERON:0001781;2.28e-85;3!UBERON:0001782;2.28e-85;3!UBERON:0000970;1.15e-35;20!UBERON:0002104;5.39e-34;21!UBERON:0000020;4.34e-31;23!UBERON:0001032;8.12e-30;24!UBERON:0004456;8.12e-30;24!UBERON:0000019;2.05e-24;19!UBERON:0000047;2.05e-24;19!UBERON:0004088;2.05e-24;19!UBERON:0010230;2.05e-24;19!UBERON:0007625;5.23e-24;11!UBERON:0001456;3.74e-22;21!UBERON:0000033;2.74e-09;50!UBERON:0010371;2.24e-08;31!UBERON:0001444;2.82e-08;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,2.28e-85,3;UBERON:0005424,2.28e-85,3;UBERON:0000966,1.22e-75,6;UBERON:0005388,1.22e-75,6;UBERON:0001802,1.22e-75,6;UBERON:0001781,2.61e-64,4;UBERON:0000970,5.39e-34,21;UBERON:0002104,5.39e-34,21;UBERON:0000020,8.12e-30,24;UBERON:0001032,8.12e-30,24;UBERON:0004456,8.12e-30,24;UBERON:0007625,5.23e-24,11;UBERON:0000019,3.15e-23,20;UBERON:0000047,3.15e-23,20;UBERON:0010312,3.15e-23,20;UBERON:0004088,3.15e-23,20;UBERON:0010230,3.15e-23,20;UBERON:0003072,3.15e-23,20;UBERON:0004128,3.15e-23,20;UBERON:0003071,3.15e-23,20;UBERON:0001456,3.56e-21,22;UBERON:0005085,3.35e-15,31;UBERON:0001444,8.37e-10,49;UBERON:0000033,1.24e-08,56;UBERON:0000153,7.72e-08,62;UBERON:0007811,7.72e-08,62;UBERON:0003056,7.72e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.621966330092223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,1.20575750823834,0,1.79951384127703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,119.762208429354,265.691863016762,1357.47866253947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,6.10148000107438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.5191411264859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.621966330092223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,1.20575750823834,0,1.79951384127703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,119.762208429354,265.691863016762,1357.47866253947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,6.10148000107438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.5191411264859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@SERPINE3 | |||
}} | }} |
Latest revision as of 18:30, 17 September 2015
Short description: | p1@SERPINE3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SERPINE3_5end |
Coexpression cluster: | C753_Retinal_retina_eye_kidney_caudate_corpus_putamen |
Association with transcript: | 0bp_to_ENST00000419898_5end |
EntrezGene: | SERPINE3 |
HGNC: | 24774 |
UniProt: | E5RG55 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.28e-85 | 3 |
visual pigment cell | 2.61e-64 | 4 |
pigment cell | 4.77e-19 | 14 |
mesothelial cell | 7.18e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 2.28e-85 | 3 |
presumptive retinal pigmented epithelium | 2.28e-85 | 3 |
retina | 1.22e-75 | 6 |
photoreceptor array | 1.22e-75 | 6 |
posterior segment of eyeball | 1.22e-75 | 6 |
layer of retina | 2.61e-64 | 4 |
eye | 5.39e-34 | 21 |
visual system | 5.39e-34 | 21 |
sense organ | 8.12e-30 | 24 |
sensory system | 8.12e-30 | 24 |
entire sense organ system | 8.12e-30 | 24 |
pigment epithelium of eye | 5.23e-24 | 11 |
camera-type eye | 3.15e-23 | 20 |
simple eye | 3.15e-23 | 20 |
immature eye | 3.15e-23 | 20 |
ocular region | 3.15e-23 | 20 |
eyeball of camera-type eye | 3.15e-23 | 20 |
optic cup | 3.15e-23 | 20 |
optic vesicle | 3.15e-23 | 20 |
eye primordium | 3.15e-23 | 20 |
face | 3.56e-21 | 22 |
ectodermal placode | 3.35e-15 | 31 |
subdivision of head | 8.37e-10 | 49 |
head | 1.24e-08 | 56 |
anterior region of body | 7.72e-08 | 62 |
craniocervical region | 7.72e-08 | 62 |
pre-chordal neural plate | 7.72e-08 | 61 |