FFCP PHASE1:Hg19::chr19:38308119..38308134,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:38308119..38308134,+
|short_description=p4@LOC644554
|description=CAGE_peak_4_at_LOC644554_5end
|association_with_transcript=68bp_to_NR_040013,uc002ohh.2,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=644554 | |EntrezGene=644554 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=68bp_to_NR_040013,uc002ohh.2,uc010eft.1_5end | |||
|cluster_id=chr19:38308119..38308134,+ | |||
|description=CAGE_peak_4_at_LOC644554_5end | |||
|id=chr19:38308119..38308134,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;4.94e-19;2!CL:0002573;5.13e-13;2!CL:0002319;3.04e-08;25!CL:0002149;6.10e-07;6!CL:0002255;6.10e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,3.79e-13,2;CL:0000047,1.45e-10,8;CL:0002319,3.42e-08,25;CL:0002149,5.58e-07,6;CL:0002255,5.58e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;2.17e-10;1!DOID:3001;6.10e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.89e-10,1;DOID:3001,5.58e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.81e-24!115;UBERON:0000073!1.27e-19!94;UBERON:0001016!1.27e-19!94;UBERON:0005743!2.56e-17!86;UBERON:0001017!9.21e-17!82;UBERON:0001049!4.41e-16!57;UBERON:0005068!4.41e-16!57;UBERON:0006241!4.41e-16!57;UBERON:0007135!4.41e-16!57;UBERON:0003075!6.62e-16!86;UBERON:0007284!6.62e-16!86;UBERON:0004121!5.71e-15!169;UBERON:0002346!1.39e-14!90;UBERON:0000924!3.62e-14!173;UBERON:0006601!3.62e-14!173;UBERON:0002616!7.05e-14!59;UBERON:0002780!4.24e-12!41;UBERON:0001890!4.24e-12!41;UBERON:0006240!4.24e-12!41;UBERON:0000955!5.29e-12!69;UBERON:0006238!5.29e-12!69;UBERON:0003080!1.24e-11!42;UBERON:0003056!3.58e-11!61;UBERON:0000153!7.00e-11!129;UBERON:0007811!7.00e-11!129;UBERON:0002020!1.85e-10!34;UBERON:0003528!1.85e-10!34;UBERON:0000033!2.70e-10!123;UBERON:0001893!3.58e-10!34;UBERON:0002791!1.38e-09!33;UBERON:0001869!4.45e-09!32;UBERON:0000062!5.72e-09!511;UBERON:0000922!3.88e-08!612;UBERON:0000956!5.45e-08!25;UBERON:0000203!5.45e-08!25;UBERON:0000468!7.63e-08!659;UBERON:0000467!1.05e-07!625;UBERON:0000480!1.25e-07!626;UBERON:0002619!2.63e-07!22;UBERON:0000923!2.85e-07!604;UBERON:0005291!2.85e-07!604;UBERON:0006598!2.85e-07!604;UBERON:0002532!2.85e-07!604;UBERON:0002050!3.37e-07!605;UBERON:0005423!3.37e-07!605;UBERON:0001950!5.12e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;3.26e-21;4!UBERON:0010133;3.26e-21;4!UBERON:0000007;1.88e-19;2!UBERON:0001894;2.22e-12;7!UBERON:0002146;2.17e-10;1!UBERON:0005623;2.17e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,7.45e-21,4;UBERON:0010133,7.45e-21,4;UBERON:0000007,2.86e-19,2;UBERON:0001016,3.50e-12,89;UBERON:0001894,3.54e-12,7;UBERON:0006222,3.54e-12,7;UBERON:0002146,2.28e-10,1;UBERON:0005623,2.28e-10,1;UBERON:0001017,2.32e-09,81;UBERON:0000073,1.58e-07,53;UBERON:0002616,1.58e-07,53;UBERON:0002780,2.10e-07,41;UBERON:0001890,2.10e-07,41;UBERON:0003080,2.10e-07,41;UBERON:0006240,2.10e-07,41;UBERON:0001049,4.31e-07,56;UBERON:0005068,4.31e-07,56;UBERON:0006241,4.31e-07,56;UBERON:0007135,4.31e-07,56 | |||
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| ||
|short_description=p4@LOC644554 | |||
}} | }} |
Latest revision as of 18:29, 17 September 2015
Short description: | p4@LOC644554 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LOC644554_5end |
Coexpression cluster: | NA |
Association with transcript: | 68bp_to_NR_040013, uc002ohh.2, uc010eft.1_5end |
EntrezGene: | LOC644554 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 3.79e-13 | 2 |
neuronal stem cell | 1.45e-10 | 8 |
neural cell | 3.42e-08 | 25 |
epithelial cell of uterus | 5.58e-07 | 6 |
stromal cell of endometrium | 5.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 7.45e-21 | 4 |
neuroendocrine gland | 7.45e-21 | 4 |
pituitary gland | 2.86e-19 | 2 |
nervous system | 3.50e-12 | 89 |
diencephalon | 3.54e-12 | 7 |
future diencephalon | 3.54e-12 | 7 |
pulmonary valve | 2.28e-10 | 1 |
semi-lunar valve | 2.28e-10 | 1 |
central nervous system | 2.32e-09 | 81 |
regional part of nervous system | 1.58e-07 | 53 |
regional part of brain | 1.58e-07 | 53 |
regional part of forebrain | 2.10e-07 | 41 |
forebrain | 2.10e-07 | 41 |
anterior neural tube | 2.10e-07 | 41 |
future forebrain | 2.10e-07 | 41 |
neural tube | 4.31e-07 | 56 |
neural rod | 4.31e-07 | 56 |
future spinal cord | 4.31e-07 | 56 |
neural keel | 4.31e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.89e-10 | 1 |
female reproductive endometrioid cancer | 5.58e-07 | 6 |