FFCP PHASE1:Hg19::chr2:56150507..56150564,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:56150507..56150564,- to FFCP PHASE1:Hg19::chr2:56150507..56150564,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2202 | |EntrezGene=2202 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3218 | |HGNC=3218 | ||
|TSSclassifier=strong | |||
|UniProt=Q12805 | |UniProt=Q12805 | ||
|association_with_transcript=-151bp_to_ENST00000394554,uc002rzh.2_5end | |||
|cluster_id=chr2:56150507..56150564,- | |||
|coexpression_cluster_id=C263 | |||
|description=CAGE_peak_4_at_EFEMP1_5end | |||
|id=chr2:56150507..56150564,- | |||
|ontology_enrichment_celltype=CL:0000066!7.57e-16!254;CL:0000220!1.28e-15!246;CL:0002321!3.84e-15!248;CL:0000076!8.14e-15!62;CL:0000222!1.76e-14!119;CL:0000213!1.65e-12!57;CL:0000215!1.65e-12!57;CL:0002139!2.55e-12!24;CL:0002078!1.00e-08!44;CL:0002076!1.39e-08!43;CL:0000071!1.87e-08!18;CL:0002546!1.87e-08!18;CL:0002368!8.62e-08!13;CL:0000115!9.87e-08!35;CL:0000359!3.01e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.76e-11;24!CL:0002368;7.34e-11;13!CL:0002076;1.01e-10;42!CL:0002251;6.04e-09;20!CL:0002138;5.69e-08;6!CL:0000076;8.58e-08;63!CL:0002078;2.82e-07;45!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9!CL:0000213;8.13e-07;58!CL:0000215;8.13e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.70e-16,253;CL:0000076,3.53e-14,63;CL:0002076,7.54e-14,42;CL:0002321,9.12e-13,250;CL:0002139,1.36e-11,24;CL:0000213,3.56e-11,58;CL:0000215,3.56e-11,58;CL:0002368,6.09e-11,13;CL:0000223,9.16e-10,58;CL:0002251,4.30e-09,20;CL:0002078,1.03e-08,45;CL:0000222,2.83e-08,121;CL:0005020,4.65e-08,6;CL:0002138,4.65e-08,6;CL:0005022,4.65e-08,6;CL:0000057,8.04e-08,76;CL:0000153,5.07e-07,9;CL:0000447,5.07e-07,9;CL:0000115,6.19e-07,36 | |||
|ontology_enrichment_development_v019=CL:0005022;5.69e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;1.11e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.06e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!3.86e-16!79;UBERON:0007798!3.86e-16!79;UBERON:0004872!5.16e-16!84;UBERON:0000055!6.11e-15!69;UBERON:0000477!3.12e-13!286;UBERON:0001981!3.59e-13!60;UBERON:0007500!3.59e-13!60;UBERON:0004537!3.59e-13!60;UBERON:0006965!3.59e-13!60;UBERON:0004535!1.09e-12!110;UBERON:0001009!3.49e-12!113;UBERON:0001637!1.39e-11!42;UBERON:0003509!1.39e-11!42;UBERON:0004572!1.39e-11!42;UBERON:0006914!1.29e-10!25;UBERON:0000490!1.46e-10!138;UBERON:0004573!4.04e-10!33;UBERON:0004571!4.04e-10!33;UBERON:0003914!7.00e-10!118;UBERON:0004111!1.36e-09!241;UBERON:0001004!2.07e-09!72;UBERON:0000468!2.34e-09!659;UBERON:0000487!7.62e-09!22;UBERON:0001986!1.87e-08!18;UBERON:0004638!1.87e-08!18;UBERON:0004852!1.87e-08!18;UBERON:0000483!4.66e-08!309;UBERON:0000467!1.02e-07!625;UBERON:0000119!1.23e-07!312;UBERON:0000480!1.35e-07!626;UBERON:0000065!1.68e-07!53;UBERON:0000475!7.41e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.97e-10;9!UBERON:0000042;2.97e-10;9!UBERON:0006914;4.32e-09;25!UBERON:0000490;7.51e-09;33!UBERON:0003688;2.04e-07;6!UBERON:0002358;2.04e-07;6!UBERON:0003684;2.04e-07;6!UBERON:0001178;2.04e-07;6!UBERON:0000487;7.77e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.48e-10,68;UBERON:0002049,3.75e-10,78;UBERON:0007798,3.75e-10,78;UBERON:0004872,2.52e-09,83;UBERON:0006914,3.13e-09,25;UBERON:0001004,6.57e-09,74;UBERON:0004535,2.16e-08,109;UBERON:0001009,7.10e-08,112;UBERON:0007500,1.16e-07,59;UBERON:0001981,1.16e-07,59;UBERON:0004537,1.16e-07,59;UBERON:0006965,1.16e-07,59;UBERON:0000033,1.91e-07,56;UBERON:0003688,2.15e-07,6;UBERON:0002358,2.15e-07,6;UBERON:0003684,2.15e-07,6;UBERON:0001178,2.15e-07,6;UBERON:0004457,3.12e-07,12;UBERON:0000042,3.12e-07,12;UBERON:0000166,4.08e-07,22;UBERON:0004923,5.95e-07,66;UBERON:0000487,7.09e-07,22;UBERON:0001444,9.96e-07,49 | |||
|phase1_expression=3.81524596468169,1.2846031433459,4.08767771878316,2.00146596706261,2.23480547213644,5.23403114460221,0,0,0,0.245733936501509,0.697801167972428,0.873765488520689,0,0.495065411840187,0.994192127183747,0,0.602694528023977,2.19093027116212,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,2.75826367343678,2.71085326900425,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,2.04580098949649,5.06014813338393,9.5254203020819,11.4428749979051,0,2.91980922181582,0.850813354476611,0.665188192387692,1.14185221401064,0.261958150995425,1.09288586487763,1.48313777113772,0,0,0,0,0,0,1.39133685156694,0.860234595106124,1.38856200643038,3.39184765154406,0.419499436209906,1.10047216776027,0.626984899610432,2.06733407335463,2.84613010149368,6.6944122552934,1.20848795132744,4.56163263431108,2.19655851793353,0.735326160691737,1.62028389576352,2.85759130509055,0.44905874525234,1.23872628531654,1.53316637465883,1.89853131913626,0.916008719652036,0,0,1.3082821564276,2.98183171017191,4.68532893158945,4.10468460520978,7.74458876021797,0.709336764396714,3.92474320099615,1.06748995729705,1.72667283892012,4.66816553099649,0.67355336034844,0.653847612453835,0.302714855289863,0,0.234321431833797,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0.30648779579902,0,2.26864366320042,4.12596162084383,2.98980344345994,2.33125091275518,1.50045548042201,1.54578793857658,0.257640540045629,0,1.18143432568886,1.16924406193438,3.78650661366172,2.85354685791128,1.13152239773168,5.32514388774922,0.906768884048762,0,2.31913023795956,1.36373060295417,1.72082757233402,0,0,0,0,0.252320850875628,0,0,0,0,0,0,1.0647612003586,0.337169380156203,0.723033089650446,1.65440959098591,1.52515610864684,1.18635309555548,0.943819157121151,0.784885860501384,0.769494313892781,0,0,0.4115740113314,0,0,0,0,0,0,1.02940686179115,2.30475599358114,0,0.804231779293047,4.0738915869753,0,0,1.44331342025273,0.231860809950154,2.11335649624479,2.88732895522148,5.09284063834272,3.99533719692656,0,0,0,0,0,3.74935335947108,4.03157107677263,0.850650583454319,2.23896306757121,1.45316969256981,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,1.14382394926518,0,0,0,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0.434343920002738,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,1.00034104211935,0,0.831883446123229,0,1.73472656537328,0.585707074963566,0.601892199455438,4.5481500811197,0,0.664225598535437,0.368738337083406,0.173767228936166,0,0,0,0,0,0.606255142892519,1.66435439510497,1.5119514666484,6.20269519546942,10.5888761568763,3.64858122762996,3.45975702990393,3.58195074346692,1.76939313257968,2.96836132889982,0,0,0,0,0,0,3.80962293576241,0.920809889358963,1.03333003348146,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0.431831832204279,1.54227252690289,0,0,0,0,0,0,0,0.512900250232778,0.656029291399411,3.90454073597164,0.515205058238611,0,0,0.574265537996172,1.30012049207304,3.21367859688319,0,0,0,0,0.429680979473094,0,0.0852266274161009,0,9.58652509093673,3.65161127993702,5.99779748724545,2.6301023022443,0.464845549297286,3.46293581513704,0,0.308033580176089,2.12922412126809,0,0.74129687641568,2.71937284809783,0.372158369359667,0.316379424718726,8.00646814480064,0,0,0.95460974377781,0,0.719489830333259,0.274537029736055,0.353437207037059,0.606547444719948,1.58510321173008,0.842516912477962,0,1.21856744815642,2.11300293513511,0,0.141405431953713,0,1.10273068709225,5.97095077717098,3.94605796728386,0.578775534266688,0,1.21746226177622,0.6196469961995,0.281695602532241,0.286822704408103,1.08073945114433,0.7133421029625,0,7.81098250601357,2.96365403663912,0,0,5.48466042535419,4.69211592875051,4.3556393944529,0.0941438007767792,0,0,1.33029046061003,1.83778720165568,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62618933211459,0.890894042497916,3.37876772309155,0,0.140669416410513,1.33570446027487,0,0,0.398495976502139,0,0,2.45444838005172,0,0,0.629078458031288,0,0,0.0986434056369336,0,1.11136990144637,0,0,0,0.520855522170466,0,0,3.75518379342149,2.79679015322043,0,0,0,0,0,0.120596438625408,0,0,0,0.658156191461918,0.980446171670911,78.9138392616895,0.846452843541768,3.30431961956303,0,0,0,0.638002319463839,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0.978323094660449,0,0.789168805698781,0,0.30607276163049,1.70603764996917,0,0,0,0,0,0,0,0,0,10.4851865233384,2.69883540399248,0.52418000472609,0,0.967563312890852,0.65780385377567,0.574808199372465,0.193978032976839,0,0.225980740780532,1.64450309576101,0,0,0,0.320635281006135,0.213452994739353,0.19980960958213,0,0,0,0.288109595976299,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| 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| ||
|short_description=p4@EFEMP1 | |||
}} | }} |
Latest revision as of 18:19, 17 September 2015
Short description: | p4@EFEMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_EFEMP1_5end |
Coexpression cluster: | C263_cervical_keratoacanthoma_tongue_skin_esophagus_throat_tonsil |
Association with transcript: | -151bp_to_ENST00000394554, uc002rzh.2_5end |
EntrezGene: | EFEMP1 |
HGNC: | 3218 |
UniProt: | Q12805 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.70e-16 | 253 |
squamous epithelial cell | 3.53e-14 | 63 |
endo-epithelial cell | 7.54e-14 | 42 |
embryonic cell | 9.12e-13 | 250 |
endothelial cell of vascular tree | 1.36e-11 | 24 |
lining cell | 3.56e-11 | 58 |
barrier cell | 3.56e-11 | 58 |
respiratory epithelial cell | 6.09e-11 | 13 |
endodermal cell | 9.16e-10 | 58 |
epithelial cell of alimentary canal | 4.30e-09 | 20 |
meso-epithelial cell | 1.03e-08 | 45 |
mesodermal cell | 2.83e-08 | 121 |
lymphangioblast | 4.65e-08 | 6 |
endothelial cell of lymphatic vessel | 4.65e-08 | 6 |
vascular lymphangioblast | 4.65e-08 | 6 |
fibroblast | 8.04e-08 | 76 |
GAG secreting cell | 5.07e-07 | 9 |
carbohydrate secreting cell | 5.07e-07 | 9 |
endothelial cell | 6.19e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.48e-10 | 68 |
vasculature | 3.75e-10 | 78 |
vascular system | 3.75e-10 | 78 |
splanchnic layer of lateral plate mesoderm | 2.52e-09 | 83 |
squamous epithelium | 3.13e-09 | 25 |
respiratory system | 6.57e-09 | 74 |
cardiovascular system | 2.16e-08 | 109 |
circulatory system | 7.10e-08 | 112 |
epithelial tube open at both ends | 1.16e-07 | 59 |
blood vessel | 1.16e-07 | 59 |
blood vasculature | 1.16e-07 | 59 |
vascular cord | 1.16e-07 | 59 |
head | 1.91e-07 | 56 |
omentum | 2.15e-07 | 6 |
peritoneum | 2.15e-07 | 6 |
abdominal cavity | 2.15e-07 | 6 |
visceral peritoneum | 2.15e-07 | 6 |
cavity lining | 3.12e-07 | 12 |
serous membrane | 3.12e-07 | 12 |
oral opening | 4.08e-07 | 22 |
organ component layer | 5.95e-07 | 66 |
simple squamous epithelium | 7.09e-07 | 22 |
subdivision of head | 9.96e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.06e-07 | 14 |