FFCP PHASE1:Hg19::chr1:3447923..3447933,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:3447923..3447933,- to FFCP PHASE1:Hg19::chr1:3447923..3447933,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1953 | |EntrezGene=1953 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3232 | |HGNC=3232 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=78bp_to_ENST00000294599,uc001akk.2_5end | |||
|cluster_id=chr1:3447923..3447933,- | |||
|coexpression_cluster_id=C3974 | |||
|description=CAGE_peak_3_at_MEGF6_5end | |||
|id=chr1:3447923..3447933,- | |||
|ontology_enrichment_celltype=CL:0000057!4.91e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002138;3.10e-10;6!CL:0002620;1.95e-09;23!CL:0002595;1.03e-08;5!CL:1000306;2.35e-08;4!CL:0002547;2.35e-08;4!CL:0002334;1.34e-07;12!CL:0002580;2.53e-07;3!CL:0002139;6.30e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.63e-13,76;CL:0005020,6.67e-10,6;CL:0002138,6.67e-10,6;CL:0005022,6.67e-10,6;CL:0002620,1.71e-09,23;CL:1000306,1.93e-08,4;CL:0002547,1.93e-08,4;CL:0002595,2.29e-08,5;CL:0002334,1.05e-07,12;CL:0002580,2.08e-07,3;CL:0002139,8.52e-07,24 | |||
|ontology_enrichment_development_v019=CL:0005022;3.10e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;5.81e-10;5!DOID:450;5.81e-10;5!DOID:66;5.81e-10;5!DOID:423;5.81e-10;5!DOID:0080000;5.81e-10;5!DOID:11722;5.81e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.41e-10,5;DOID:450,5.41e-10,5;DOID:66,5.41e-10,5;DOID:423,5.41e-10,5;DOID:0080000,5.41e-10,5;DOID:11722,5.41e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0000055!1.50e-07!69;UBERON:0004872!4.12e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.34e-10;9!UBERON:0000042;3.34e-10;9!UBERON:0003834;1.03e-08;5!UBERON:0001533;1.03e-08;5!UBERON:0003688;2.07e-08;6!UBERON:0002358;2.07e-08;6!UBERON:0003684;2.07e-08;6!UBERON:0001178;2.07e-08;6!UBERON:0004797;2.35e-08;4!UBERON:0000415;2.35e-08;4!UBERON:0007240;2.35e-08;4!UBERON:0005742;2.35e-08;4!UBERON:0005734;2.35e-08;4!UBERON:0004664;2.35e-08;4!UBERON:0004663;2.35e-08;4!UBERON:0001473;1.74e-07;8!UBERON:0004536;1.74e-07;8!UBERON:0006558;1.74e-07;8!UBERON:0004573;3.65e-07;33!UBERON:0004571;3.65e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,8.07e-10,68;UBERON:0003688,1.89e-08,6;UBERON:0002358,1.89e-08,6;UBERON:0003684,1.89e-08,6;UBERON:0001178,1.89e-08,6;UBERON:0000415,1.93e-08,4;UBERON:0007240,1.93e-08,4;UBERON:0005742,1.93e-08,4;UBERON:0005734,1.93e-08,4;UBERON:0004664,1.93e-08,4;UBERON:0004663,1.93e-08,4;UBERON:0003834,2.29e-08,5;UBERON:0001533,2.29e-08,5;UBERON:0002049,8.90e-08,78;UBERON:0007798,8.90e-08,78;UBERON:0004573,9.72e-08,33;UBERON:0004571,9.72e-08,33;UBERON:0004457,1.87e-07,12;UBERON:0000042,1.87e-07,12;UBERON:0001637,2.51e-07,42;UBERON:0003509,2.51e-07,42;UBERON:0004572,2.51e-07,42;UBERON:0001473,3.03e-07,8;UBERON:0004536,3.03e-07,8;UBERON:0006558,3.03e-07,8;UBERON:0002097,4.90e-07,41;UBERON:0004797,9.22e-07,7 | |||
|phase1_expression=3.45188920614058,0.642301571672949,2.81908808191942,3.00219895059391,0.446961094427288,3.48935409640147,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0.246242116153576,0.816002764977012,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0,0,0,0,0.293600439334847,0,0,0.217010870715852,0.223915474239924,0,0.257575567634187,0.436194716338694,0,0,1.16214518452842,0,0,0.863077176966451,0,0,1.72372840368309,0,0,0.752969358170419,0,0,0.306083892370903,0,0,0,0,0,0.580418477257168,0,0,1.00499466102697,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,1.32171328579026,0,0,0.786839080455332,0.786021525498329,0.205601498999509,0.334372990781356,0.32592226663359,0,0,0.222820913770347,0.589211814949674,0.443067789167242,0,0.128091319725675,0.260118695119756,0,0,0,0.296573126324121,0.802622484269139,0,0,0.766440987203842,0,0,0.318565414324097,0.651083453856419,0,0.301150238155546,0.255973222308837,0,0.473554504088034,0,0,0,0.579297615531196,0,0,0.511450247374121,3.2529523714611,1.50401373190767,3.76600949298142,0,0.486634870302636,0.0945348171640679,0.221729397462564,0,0.130979075497713,0,0.370784442784429,0,0.174129737299267,0.132957960518865,0,0,0,0.596287222100115,0.860234595106124,1.38856200643038,2.26123176769604,2.51699661725944,0.825354125820202,0.208994966536811,1.29208379584664,1.06729878806013,1.00416183829401,1.20848795132744,0.760272105718513,3.41686880567437,0,0,0.0892997282840798,0.673588117878509,0.225222960966644,0,0,0.916008719652036,0,0,0,1.98788780678127,1.51956613997496,2.64818361626438,10.6129549677061,2.12801029319014,2.80338800071154,1.06748995729705,1.2333377420858,0.311211035399766,0,0.163461903113459,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0.103325781175765,0,0.989067717114227,0.910161361938026,0,0,0,0.277064115484183,0,0.30648779579902,0,0.453728732640084,3.58779271377724,4.48470516518992,1.27159140695737,3.00091096084402,1.54578793857658,5.66809188100384,1.30281799432113,2.19409231913646,0.876933046450788,1.26216887122057,1.38074847963449,0.969876340912871,5.68015348026583,1.41052937518696,0.339121184620975,0.386521706326594,0.272746120590835,0,0.121973706129595,0.265059536642971,0.116193942869518,0.310983165046111,0,0,1.56449532329816,3.85944562915731,0,0,0,0.473227200159376,0.168584690078102,0,0.220587945464788,0.217879444092406,0.237270619111097,0.808987848960987,0.588664395376038,1.15424147083917,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0.185176890317059,0,0,0,0.115930404975077,1.29149563659404,1.15493158208859,3.70388410061289,1.52203321787679,0.790204397959275,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,2.48793738648926,1.29707958075265,2.27236380167484,0.444485260045183,0.381988425558278,0,0,0.205654985406647,0,0,0.112131084345361,0,0,1.80980402060889,0,0,0,0,0,0,0,0.285955987316295,1.08524321078289,0,0,0.355391948742546,0,0,0,0.399891964728228,0,0,2.10833939483032,1.19812427745791,2.29723871668228,0,0.434343920002738,1.02738161275192,0.358121926479791,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0,5.8231841228626,3.92543775353756,5.99269177128952,5.03708084468667,0,4.5481500811197,1.03473071292505,0,0.368738337083406,0.173767228936166,0.195801157462741,0,0,0,0.320182673410333,0,0,0.30239029332968,7.44323423456331,5.37116906508219,2.80660094433074,2.56278298511402,2.55853624533352,2.0911009748669,2.96836132889982,0.154209693802656,0.177561725313127,0,0.519254429183621,0.116210378459959,0.120859449591622,0,0,0,0,0,0.451199612907412,0.15403067420883,0.784349769176855,0,0.422206515571503,0,0.340187410553031,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0,0.447749509444357,0,0,0,1.64007322849853,0,0.206082023295445,0.366277859273374,0.330037999682352,0.574265537996172,0,1.6068392984416,0.096670718292122,0,0.15350367472613,0,0,0,0,0,0.165284915360978,0,0.382838137483752,0.10115778085555,0,5.35180989612088,0.6970372701606,0.308033580176089,0,0.869932992075073,0.55597265731176,1.14499909393593,0,0.316379424718726,0,0.255897791311334,0,0.636406495851874,0,0,0,0,0,0,0,0,1.21856744815642,1.05650146756755,0.136499911407986,0,1.13008116620243,1.10273068709225,1.32687795048244,2.19225442626881,0,0,0.405820753925408,0,0,0,0.294747123039363,0,0,5.06658324714394,1.97576935775941,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.714695326373367,0.411362273086194,0,0,0,0.106824071127473,0,0.980160863924127,0,0,0,0,0.199579371432817,0,0.211673582723883,0,0.561594356226918,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0.73254089635947,0,0,0,0.23874448473769,1.78178808499583,0.307160702099232,0,0.140669416410513,0,0,0.211125408127993,2.98871982376605,0.276283915531148,0,0,0,3.11039587661807,0.179736702294654,0,0,0.295930216910801,0,3.33410970433911,0,0,0,0.7812832832557,2.18649999990489,0.724999575434793,0.1137934482855,0,3.7822029082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| ||
|short_description=p3@MEGF6 | |||
}} | }} |
Latest revision as of 17:34, 17 September 2015
Short description: | p3@MEGF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MEGF6_5end |
Coexpression cluster: | C3974_basal_Olfactory_Preadipocyte_tenocyte_Fibroblast_mesodermal_spindle |
Association with transcript: | 78bp_to_ENST00000294599, uc001akk.2_5end |
EntrezGene: | MEGF6 |
HGNC: | 3232 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.63e-13 | 76 |
lymphangioblast | 6.67e-10 | 6 |
endothelial cell of lymphatic vessel | 6.67e-10 | 6 |
vascular lymphangioblast | 6.67e-10 | 6 |
skin fibroblast | 1.71e-09 | 23 |
fibroblast of tunica adventitia of artery | 1.93e-08 | 4 |
fibroblast of the aortic adventitia | 1.93e-08 | 4 |
smooth muscle cell of the subclavian artery | 2.29e-08 | 5 |
preadipocyte | 1.05e-07 | 12 |
preadipocyte of the breast | 2.08e-07 | 3 |
endothelial cell of vascular tree | 8.52e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
vessel | 8.07e-10 | 68 |
omentum | 1.89e-08 | 6 |
peritoneum | 1.89e-08 | 6 |
abdominal cavity | 1.89e-08 | 6 |
visceral peritoneum | 1.89e-08 | 6 |
artery wall | 1.93e-08 | 4 |
tunica adventitia of artery | 1.93e-08 | 4 |
adventitia | 1.93e-08 | 4 |
tunica adventitia of blood vessel | 1.93e-08 | 4 |
aorta tunica adventitia | 1.93e-08 | 4 |
aorta wall | 1.93e-08 | 4 |
thoracic segment blood vessel | 2.29e-08 | 5 |
subclavian artery | 2.29e-08 | 5 |
vasculature | 8.90e-08 | 78 |
vascular system | 8.90e-08 | 78 |
systemic artery | 9.72e-08 | 33 |
systemic arterial system | 9.72e-08 | 33 |
cavity lining | 1.87e-07 | 12 |
serous membrane | 1.87e-07 | 12 |
artery | 2.51e-07 | 42 |
arterial blood vessel | 2.51e-07 | 42 |
arterial system | 2.51e-07 | 42 |
lymphatic vessel | 3.03e-07 | 8 |
lymph vasculature | 3.03e-07 | 8 |
lymphatic part of lymphoid system | 3.03e-07 | 8 |
skin of body | 4.90e-07 | 41 |
blood vessel layer | 9.22e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.41e-10 | 5 |
myotonic disease | 5.41e-10 | 5 |
muscle tissue disease | 5.41e-10 | 5 |
myopathy | 5.41e-10 | 5 |
muscular disease | 5.41e-10 | 5 |
myotonic dystrophy | 5.41e-10 | 5 |