FFCP PHASE1:Hg19::chr2:55459786..55459807,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:55459786..55459807,+
|short_description=p2@RPS27A
|description=CAGE_peak_2_at_RPS27A_5end
|association_with_transcript=-6bp_to_ENST00000404735,NM_001177413...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6233 | |EntrezGene=6233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10417 | |HGNC=10417 | ||
|TSSclassifier=strong | |||
|UniProt=P62979,B2RDW1 | |UniProt=P62979,B2RDW1 | ||
|association_with_transcript=-6bp_to_ENST00000404735,NM_001177413_5end | |||
|cluster_id=chr2:55459786..55459807,+ | |||
|coexpression_cluster_id=C1162 | |||
|description=CAGE_peak_2_at_RPS27A_5end | |||
|id=chr2:55459786..55459807,+ | |||
|ontology_enrichment_celltype=CL:0000012!5.15e-26!682;CL:0000548!8.09e-26!679;CL:0000004!8.09e-26!679;CL:0000255!8.09e-26!679;CL:0002321!4.29e-21!248;CL:0000220!1.37e-20!246;CL:0000066!3.03e-18!254;CL:0000055!1.82e-14!180;CL:0000003!5.87e-14!722;CL:0000393!1.45e-12!60;CL:0000211!1.45e-12!60;CL:0000144!2.11e-12!625;CL:0000680!3.57e-12!57;CL:0000056!3.57e-12!57;CL:0000355!3.57e-12!57;CL:0000187!7.62e-12!54;CL:0000183!2.44e-11!59;CL:0000192!2.16e-10!42;CL:0000514!2.16e-10!42;CL:0000222!4.02e-10!119;CL:0002371!2.06e-08!591;CL:0000359!6.14e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.35e-07;32!CL:0000187;3.23e-07;55!CL:0000192;5.36e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.27e-21,250;CL:0000066,1.28e-18,253;CL:0000393,4.02e-12,61;CL:0000211,4.02e-12,61;CL:0000680,1.00e-11,58;CL:0000056,1.00e-11,58;CL:0000355,1.00e-11,58;CL:0000187,2.17e-11,55;CL:0000222,3.07e-10,121;CL:0000192,7.89e-10,43;CL:0000514,7.89e-10,43;CL:0000359,5.97e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000514;5.36e-07;43 | |||
|ontology_enrichment_disease=DOID:14566!4.58e-22!239;DOID:162!4.41e-21!235;DOID:0050687!9.49e-15!143;DOID:305!5.50e-13!106;DOID:0050686!3.12e-08!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,5.50e-22,239;DOID:162,5.29e-21,235;DOID:0050687,1.07e-14,143;DOID:305,6.28e-13,106;DOID:0050686,3.67e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0003104!3.78e-15!238;UBERON:0009142!3.78e-15!238;UBERON:0000914!5.66e-14!83;UBERON:0002329!5.66e-14!83;UBERON:0003077!5.66e-14!83;UBERON:0003059!5.66e-14!83;UBERON:0007282!5.66e-14!83;UBERON:0009618!5.66e-14!83;UBERON:0007285!5.66e-14!83;UBERON:0000486!2.10e-13!82;UBERON:0004290!5.01e-13!70;UBERON:0002100!7.68e-12!216;UBERON:0005256!5.99e-11!143;UBERON:0001134!9.65e-11!61;UBERON:0002036!9.65e-11!61;UBERON:0003082!9.65e-11!61;UBERON:0002385!1.12e-09!63;UBERON:0001015!1.12e-09!63;UBERON:0000383!1.12e-09!63;UBERON:0000490!2.07e-09!138;UBERON:0000072!8.26e-08!46;UBERON:0008947!1.26e-07!38;UBERON:0003258!1.26e-07!38;UBERON:0001737!4.66e-07!9;UBERON:0000481!6.33e-07!347;UBERON:0001637!9.66e-07!42;UBERON:0003509!9.66e-07!42;UBERON:0004572!9.66e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;7.78e-08;37!UBERON:0001737;4.15e-07;9!UBERON:0001557;4.15e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,5.45e-13,83;UBERON:0002329,1.41e-12,71;UBERON:0003059,1.41e-12,71;UBERON:0007282,1.41e-12,71;UBERON:0004290,1.41e-12,71;UBERON:0009618,1.41e-12,71;UBERON:0007503,1.50e-12,78;UBERON:0003077,3.38e-12,72;UBERON:0007285,3.38e-12,72;UBERON:0007524,4.86e-12,73;UBERON:0002100,3.26e-11,199;UBERON:0000490,5.14e-11,148;UBERON:0001134,2.59e-10,62;UBERON:0002036,2.59e-10,62;UBERON:0003082,2.59e-10,62;UBERON:0005256,1.06e-09,122;UBERON:0002385,2.75e-09,64;UBERON:0001015,2.75e-09,64;UBERON:0000383,2.75e-09,64;UBERON:0003104,9.07e-08,160;UBERON:0009142,9.07e-08,160;UBERON:0008947,1.58e-07,38;UBERON:0003258,1.58e-07,38;UBERON:0000072,2.09e-07,47;UBERON:0001737,4.56e-07,9 | |||
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| ||
|short_description=p2@RPS27A | |||
}} | }} |
Latest revision as of 17:17, 17 September 2015
Short description: | p2@RPS27A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RPS27A_5end |
Coexpression cluster: | C1162_embryonic_iPS_Keratinocyte_giant_teratocarcinoma_acute_chronic |
Association with transcript: | -6bp_to_ENST00000404735, NM_001177413_5end |
EntrezGene: | RPS27A |
HGNC: | 10417 |
UniProt: | P62979B2RDW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.27e-21 | 250 |
epithelial cell | 1.28e-18 | 253 |
electrically responsive cell | 4.02e-12 | 61 |
electrically active cell | 4.02e-12 | 61 |
muscle precursor cell | 1.00e-11 | 58 |
myoblast | 1.00e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.00e-11 | 58 |
muscle cell | 2.17e-11 | 55 |
mesodermal cell | 3.07e-10 | 121 |
smooth muscle cell | 7.89e-10 | 43 |
smooth muscle myoblast | 7.89e-10 | 43 |
vascular associated smooth muscle cell | 5.97e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 5.45e-13 | 83 |
somite | 1.41e-12 | 71 |
presomitic mesoderm | 1.41e-12 | 71 |
presumptive segmental plate | 1.41e-12 | 71 |
dermomyotome | 1.41e-12 | 71 |
trunk paraxial mesoderm | 1.41e-12 | 71 |
epithelial vesicle | 1.50e-12 | 78 |
paraxial mesoderm | 3.38e-12 | 72 |
presumptive paraxial mesoderm | 3.38e-12 | 72 |
dense mesenchyme tissue | 4.86e-12 | 73 |
trunk | 3.26e-11 | 199 |
unilaminar epithelium | 5.14e-11 | 148 |
skeletal muscle tissue | 2.59e-10 | 62 |
striated muscle tissue | 2.59e-10 | 62 |
myotome | 2.59e-10 | 62 |
trunk mesenchyme | 1.06e-09 | 122 |
muscle tissue | 2.75e-09 | 64 |
musculature | 2.75e-09 | 64 |
musculature of body | 2.75e-09 | 64 |
mesenchyme | 9.07e-08 | 160 |
entire embryonic mesenchyme | 9.07e-08 | 160 |
respiratory primordium | 1.58e-07 | 38 |
endoderm of foregut | 1.58e-07 | 38 |
segment of respiratory tract | 2.09e-07 | 47 |
larynx | 4.56e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 5.50e-22 | 239 |
cancer | 5.29e-21 | 235 |
cell type cancer | 1.07e-14 | 143 |
carcinoma | 6.28e-13 | 106 |
organ system cancer | 3.67e-08 | 137 |