FFCP PHASE1:Hg19::chr5:33984786..33984820,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:33984786..33984820,-
|short_description=p2@SLC45A2
|description=CAGE_peak_2_at_SLC45A2_5end
|association_with_transcript=-6bp_to_ENST00000342059,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51151 | |EntrezGene=51151 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16472 | |HGNC=16472 | ||
|TSSclassifier=strong | |||
|UniProt=C9JK74,Q9UMX9 | |UniProt=C9JK74,Q9UMX9 | ||
|association_with_transcript=-6bp_to_ENST00000342059,ENST00000345083,NM_001012509,NM_016180,uc003jid.2,uc003jie.2,uc003jif.3,uc011coe.1_5end | |||
|cluster_id=chr5:33984786..33984820,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_2_at_SLC45A2_5end | |||
|id=chr5:33984786..33984820,- | |||
|ontology_enrichment_celltype=CL:0000147!2.36e-40!14;CL:0000148!1.22e-25!10;CL:0000541!1.22e-25!10;CL:0000710!2.08e-18!20;CL:0000149!3.89e-17!4;CL:0000325!5.89e-15!39;CL:0002567!2.82e-13!3;CL:0002586!2.93e-13!3;CL:0000075!4.28e-13!27;CL:0002077!2.42e-10!33 | |||
|ontology_enrichment_celltype_v019=CL:0000147;5.97e-100;14!CL:0000148;4.82e-69;10!CL:0000149;7.42e-57;4!CL:0002567;3.94e-43;3!CL:0002586;5.65e-43;3!CL:0000710;2.10e-34;20!CL:0000075;2.12e-25;27!CL:0002077;9.17e-18;34!CL:0002566;2.21e-15;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,5.97e-100,14;CL:0000148,5.61e-69,10;CL:0000541,5.61e-69,10;CL:0000149,5.98e-57,4;CL:0002567,3.94e-43,3;CL:0002586,4.55e-43,3;CL:0000710,2.26e-34,20;CL:0000075,2.25e-25,27;CL:0002077,4.51e-20,34;CL:0000333,8.81e-16,41;CL:0002566,2.38e-15,1;CL:0000133,5.56e-11,59;CL:0000221,5.85e-09,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!2.11e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;2.38e-29;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.56e-29,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!1.20e-13!5;UBERON:0005388!1.20e-13!5;UBERON:0001802!1.20e-13!5;UBERON:0001781!2.93e-13!3;UBERON:0001782!2.93e-13!3;UBERON:0005424!2.93e-13!3;UBERON:0007625!2.02e-12!11;UBERON:0000970!1.67e-11!20;UBERON:0002104!6.84e-11!21;UBERON:0000020!7.96e-10!23;UBERON:0001032!2.33e-09!24;UBERON:0004456!2.33e-09!24;UBERON:0000019!2.44e-09!19;UBERON:0000047!2.44e-09!19;UBERON:0004088!2.44e-09!19;UBERON:0003072!2.44e-09!19;UBERON:0003071!2.44e-09!19;UBERON:0004128!2.44e-09!19;UBERON:0000488!5.44e-09!4;UBERON:0001456!2.37e-08!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.51e-45;5!UBERON:0005388;2.51e-45;5!UBERON:0001802;2.51e-45;5!UBERON:0001781;5.65e-43;3!UBERON:0001782;5.65e-43;3!UBERON:0000970;1.33e-17;20!UBERON:0002104;9.07e-17;21!UBERON:0000020;2.57e-15;23!UBERON:0001032;1.11e-14;24!UBERON:0004456;1.11e-14;24!UBERON:0007625;3.07e-12;11!UBERON:0000019;3.20e-12;19!UBERON:0000047;3.20e-12;19!UBERON:0004088;3.20e-12;19!UBERON:0010230;3.20e-12;19!UBERON:0001456;4.38e-11;21!UBERON:0010371;4.81e-11;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,4.55e-43,3;UBERON:0005424,4.55e-43,3;UBERON:0000966,6.03e-38,6;UBERON:0005388,6.03e-38,6;UBERON:0001802,6.03e-38,6;UBERON:0001781,1.64e-32,4;UBERON:0000970,8.49e-17,21;UBERON:0002104,8.49e-17,21;UBERON:0000020,1.05e-14,24;UBERON:0001032,1.05e-14,24;UBERON:0004456,1.05e-14,24;UBERON:0007625,2.90e-12,11;UBERON:0000019,1.19e-11,20;UBERON:0000047,1.19e-11,20;UBERON:0010312,1.19e-11,20;UBERON:0004088,1.19e-11,20;UBERON:0010230,1.19e-11,20;UBERON:0003072,1.19e-11,20;UBERON:0004128,1.19e-11,20;UBERON:0003071,1.19e-11,20;UBERON:0001456,1.29e-10,22;UBERON:0005085,1.33e-07,31 | |||
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| ||
|short_description=p2@SLC45A2 | |||
}} | }} |
Latest revision as of 17:08, 17 September 2015
Short description: | p2@SLC45A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC45A2_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -6bp_to_ENST00000342059, ENST00000345083, NM_001012509, NM_016180, uc003jid.2, uc003jie.2, uc003jif.3, uc011coe.1_5end |
EntrezGene: | SLC45A2 |
HGNC: | 16472 |
UniProt: | C9JK74Q9UMX9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 5.97e-100 | 14 |
melanocyte | 5.61e-69 | 10 |
melanoblast | 5.61e-69 | 10 |
visual pigment cell | 5.98e-57 | 4 |
light melanocyte | 3.94e-43 | 3 |
retinal pigment epithelial cell | 4.55e-43 | 3 |
neurecto-epithelial cell | 2.26e-34 | 20 |
columnar/cuboidal epithelial cell | 2.25e-25 | 27 |
ecto-epithelial cell | 4.51e-20 | 34 |
migratory neural crest cell | 8.81e-16 | 41 |
dark melanocyte | 2.38e-15 | 1 |
neurectodermal cell | 5.56e-11 | 59 |
ectodermal cell | 5.85e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 4.55e-43 | 3 |
presumptive retinal pigmented epithelium | 4.55e-43 | 3 |
retina | 6.03e-38 | 6 |
photoreceptor array | 6.03e-38 | 6 |
posterior segment of eyeball | 6.03e-38 | 6 |
layer of retina | 1.64e-32 | 4 |
eye | 8.49e-17 | 21 |
visual system | 8.49e-17 | 21 |
sense organ | 1.05e-14 | 24 |
sensory system | 1.05e-14 | 24 |
entire sense organ system | 1.05e-14 | 24 |
pigment epithelium of eye | 2.90e-12 | 11 |
camera-type eye | 1.19e-11 | 20 |
simple eye | 1.19e-11 | 20 |
immature eye | 1.19e-11 | 20 |
ocular region | 1.19e-11 | 20 |
eyeball of camera-type eye | 1.19e-11 | 20 |
optic cup | 1.19e-11 | 20 |
optic vesicle | 1.19e-11 | 20 |
eye primordium | 1.19e-11 | 20 |
face | 1.29e-10 | 22 |
ectodermal placode | 1.33e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.56e-29 | 2 |