FFCP PHASE1:Hg19::chr13:49106957..49106986,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:49106957..49106986,+ to FFCP PHASE1:Hg19::chr13:49106957..49106986,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1102 | |EntrezGene=1102 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1914 | |HGNC=1914 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_BC031965_5end | |||
|cluster_id=chr13:49106957..49106986,+ | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_4_at_RCBTB2_5end | |||
|id=chr13:49106957..49106986,+ | |||
|ontology_enrichment_celltype=CL:0000766!7.19e-23!76;CL:0000860!1.00e-19!45;CL:0002009!1.52e-19!65;CL:0002057!1.57e-19!42;CL:0000738!2.86e-19!140;CL:0000557!2.94e-19!71;CL:0000839!6.76e-19!70;CL:0002194!1.20e-18!63;CL:0000576!1.20e-18!63;CL:0000040!1.20e-18!63;CL:0000559!1.20e-18!63;CL:0002031!6.95e-17!124;CL:0000988!1.72e-16!182;CL:0000763!2.02e-16!112;CL:0000049!2.02e-16!112;CL:0000037!2.39e-16!172;CL:0000566!2.39e-16!172;CL:0002087!5.73e-16!119;CL:0002032!1.93e-15!165;CL:0000837!1.93e-15!165;CL:0000791!5.69e-08!18;CL:0000789!5.69e-08!18;CL:0002420!5.69e-08!18;CL:0002419!5.69e-08!18;CL:0000790!5.69e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.19e-29;33!CL:0002057;1.19e-29;33!CL:0000473;1.29e-24;39!CL:0000234;1.29e-24;39!CL:0000576;6.08e-20;48!CL:0000766;6.25e-16;69!CL:0000791;8.63e-10;18!CL:0000789;8.63e-10;18!CL:0002419;8.63e-10;18!CL:0000763;2.42e-08;100!CL:0002087;2.44e-08;104!CL:0000738;1.93e-07;136!CL:0000094;4.99e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.86e-34,72;CL:0000473,1.83e-31,48;CL:0000234,1.83e-31,48;CL:0000860,9.64e-31,42;CL:0002057,9.64e-31,42;CL:0000738,2.97e-30,136;CL:0000557,1.44e-28,67;CL:0002009,2.02e-28,61;CL:0002194,5.95e-27,59;CL:0000576,5.95e-27,59;CL:0000040,5.95e-27,59;CL:0000559,5.95e-27,59;CL:0000839,1.98e-26,66;CL:0002031,1.13e-24,120;CL:0002087,2.35e-24,115;CL:0000037,3.36e-24,168;CL:0000988,4.05e-23,177;CL:0000763,1.43e-22,108;CL:0000049,1.43e-22,108;CL:0002032,1.44e-22,161;CL:0000837,1.44e-22,161;CL:0000791,2.46e-10,18;CL:0000789,2.46e-10,18;CL:0002420,2.46e-10,18;CL:0002419,2.46e-10,18;CL:0000790,2.46e-10,18;CL:0000094,1.55e-07,8;CL:0000624,9.42e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;3.15e-23;42!CL:0000790;8.63e-10;18!CL:0000049;5.21e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.54e-19!102;UBERON:0003061!3.54e-19!102;UBERON:0002193!7.22e-19!112;UBERON:0002371!4.64e-17!80;UBERON:0001474!3.61e-14!86;UBERON:0002405!4.54e-11!115;UBERON:0004765!5.01e-10!101;UBERON:0001434!5.01e-10!101;UBERON:0003081!1.27e-08!216;UBERON:0001049!1.62e-07!57;UBERON:0005068!1.62e-07!57;UBERON:0006241!1.62e-07!57;UBERON:0007135!1.62e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.96e-31,98;UBERON:0003061,3.96e-31,98;UBERON:0002193,5.81e-28,108;UBERON:0002371,2.27e-27,76;UBERON:0001474,6.24e-24,82;UBERON:0002405,1.24e-22,93;UBERON:0004765,4.15e-20,90;UBERON:0001434,2.86e-16,100;UBERON:0003081,6.98e-15,203;UBERON:0002204,7.50e-08,167 | |||
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| ||
|short_description=p4@RCBTB2 | |||
}} | }} |
Latest revision as of 15:51, 17 September 2015
Short description: | p4@RCBTB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RCBTB2_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | 0bp_to_BC031965_5end |
EntrezGene: | RCBTB2 |
HGNC: | 1914 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.86e-34 | 72 |
defensive cell | 1.83e-31 | 48 |
phagocyte | 1.83e-31 | 48 |
classical monocyte | 9.64e-31 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.64e-31 | 42 |
leukocyte | 2.97e-30 | 136 |
granulocyte monocyte progenitor cell | 1.44e-28 | 67 |
macrophage dendritic cell progenitor | 2.02e-28 | 61 |
monopoietic cell | 5.95e-27 | 59 |
monocyte | 5.95e-27 | 59 |
monoblast | 5.95e-27 | 59 |
promonocyte | 5.95e-27 | 59 |
myeloid lineage restricted progenitor cell | 1.98e-26 | 66 |
hematopoietic lineage restricted progenitor cell | 1.13e-24 | 120 |
nongranular leukocyte | 2.35e-24 | 115 |
hematopoietic stem cell | 3.36e-24 | 168 |
hematopoietic cell | 4.05e-23 | 177 |
myeloid cell | 1.43e-22 | 108 |
common myeloid progenitor | 1.43e-22 | 108 |
hematopoietic oligopotent progenitor cell | 1.44e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-22 | 161 |
mature alpha-beta T cell | 2.46e-10 | 18 |
alpha-beta T cell | 2.46e-10 | 18 |
immature T cell | 2.46e-10 | 18 |
mature T cell | 2.46e-10 | 18 |
immature alpha-beta T cell | 2.46e-10 | 18 |
granulocyte | 1.55e-07 | 8 |
CD4-positive, alpha-beta T cell | 9.42e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.96e-31 | 98 |
blood island | 3.96e-31 | 98 |
hemolymphoid system | 5.81e-28 | 108 |
bone marrow | 2.27e-27 | 76 |
bone element | 6.24e-24 | 82 |
immune system | 1.24e-22 | 93 |
skeletal element | 4.15e-20 | 90 |
skeletal system | 2.86e-16 | 100 |
lateral plate mesoderm | 6.98e-15 | 203 |
musculoskeletal system | 7.50e-08 | 167 |