FFCP PHASE1:Hg19::chr17:74540344..74540355,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=768206 | |EntrezGene=768206 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32528 | |HGNC=32528 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=459bp_to_uc002jrz.1_5end | |association_with_transcript=459bp_to_uc002jrz.1_5end | ||
|cluster_id=chr17:74540344..74540355,+ | |||
|coexpression_cluster_id=C3681 | |coexpression_cluster_id=C3681 | ||
|description=CAGE_peak_8_at_PRCD_5end | |description=CAGE_peak_8_at_PRCD_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000333;2.45e-40;5!CL:0002321;2.85e-14;15 | |ontology_enrichment_celltype_v019=CL:0000333;2.45e-40;5!CL:0002321;2.85e-14;15 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:169!3.79e-08!6 | |ontology_enrichment_disease=DOID:169!3.79e-08!6 | ||
|ontology_enrichment_disease_v019=DOID:169;7.68e-34;6!DOID:3095;4.13e-21;22!DOID:2994;4.13e-21;22!DOID:171;8.12e-21;10 | |ontology_enrichment_disease_v019=DOID:169;7.68e-34;6!DOID:3095;4.13e-21;22!DOID:2994;4.13e-21;22!DOID:171;8.12e-21;10 | ||
|ontology_enrichment_disease_v019_2=DOID:169,8.35e-34,6;DOID:3095,4.27e-21,22;DOID:2994,4.27e-21,22;DOID:171,8.54e-21,10 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.93e-57!57;UBERON:0005068!1.93e-57!57;UBERON:0006241!1.93e-57!57;UBERON:0007135!1.93e-57!57;UBERON:0000073!2.04e-49!94;UBERON:0001016!2.04e-49!94;UBERON:0002616!6.11e-47!59;UBERON:0000955!1.09e-45!69;UBERON:0006238!1.09e-45!69;UBERON:0005743!1.03e-44!86;UBERON:0002780!2.66e-44!41;UBERON:0001890!2.66e-44!41;UBERON:0006240!2.66e-44!41;UBERON:0001017!5.03e-44!82;UBERON:0003080!3.71e-43!42;UBERON:0003075!5.70e-39!86;UBERON:0007284!5.70e-39!86;UBERON:0001893!6.66e-39!34;UBERON:0002020!8.43e-39!34;UBERON:0003528!8.43e-39!34;UBERON:0002346!5.70e-37!90;UBERON:0002791!9.20e-36!33;UBERON:0001869!2.30e-32!32;UBERON:0003056!2.58e-31!61;UBERON:0007023!3.72e-30!115;UBERON:0000033!4.02e-27!123;UBERON:0004121!1.88e-26!169;UBERON:0000924!1.11e-25!173;UBERON:0006601!1.11e-25!173;UBERON:0000153!1.42e-25!129;UBERON:0007811!1.42e-25!129;UBERON:0002308!1.57e-24!9;UBERON:0000125!1.57e-24!9;UBERON:0002619!2.90e-22!22;UBERON:0001950!3.24e-20!20;UBERON:0000956!1.92e-19!25;UBERON:0000203!1.92e-19!25;UBERON:0002420!4.69e-18!9;UBERON:0007245!4.69e-18!9;UBERON:0010009!4.69e-18!9;UBERON:0010011!4.69e-18!9;UBERON:0000454!4.69e-18!9;UBERON:0009663!1.48e-16!7;UBERON:0000988!6.32e-15!3;UBERON:0003076!7.59e-15!15;UBERON:0003057!7.59e-15!15;UBERON:0002298!1.27e-14!8;UBERON:0006331!2.05e-14!3;UBERON:0000025!8.62e-14!194;UBERON:0001875!4.65e-11!2;UBERON:0006514!4.65e-11!2;UBERON:0001897!6.24e-11!2;UBERON:0002148!2.76e-10!2;UBERON:0009662!2.76e-10!2;UBERON:0004111!7.11e-10!241;UBERON:0004733!1.06e-09!12;UBERON:0002028!1.06e-09!12;UBERON:0007277!1.06e-09!12;UBERON:0000013!1.06e-09!5;UBERON:0002410!1.06e-09!5;UBERON:0000483!2.10e-09!309;UBERON:0000119!3.02e-09!312;UBERON:0000475!3.95e-09!365;UBERON:0001872!4.64e-09!5;UBERON:0004732!6.19e-09!13;UBERON:0002021!7.83e-09!5;UBERON:0000349!1.03e-08!5;UBERON:0002680!1.44e-08!9;UBERON:0001895!1.44e-08!9;UBERON:0010092!1.44e-08!9;UBERON:0000477!4.11e-08!286;UBERON:0002240!1.30e-07!3;UBERON:0000200!1.88e-07!6;UBERON:0001894!7.78e-07!7;UBERON:0006222!7.78e-07!7 | |ontology_enrichment_uberon=UBERON:0001049!1.93e-57!57;UBERON:0005068!1.93e-57!57;UBERON:0006241!1.93e-57!57;UBERON:0007135!1.93e-57!57;UBERON:0000073!2.04e-49!94;UBERON:0001016!2.04e-49!94;UBERON:0002616!6.11e-47!59;UBERON:0000955!1.09e-45!69;UBERON:0006238!1.09e-45!69;UBERON:0005743!1.03e-44!86;UBERON:0002780!2.66e-44!41;UBERON:0001890!2.66e-44!41;UBERON:0006240!2.66e-44!41;UBERON:0001017!5.03e-44!82;UBERON:0003080!3.71e-43!42;UBERON:0003075!5.70e-39!86;UBERON:0007284!5.70e-39!86;UBERON:0001893!6.66e-39!34;UBERON:0002020!8.43e-39!34;UBERON:0003528!8.43e-39!34;UBERON:0002346!5.70e-37!90;UBERON:0002791!9.20e-36!33;UBERON:0001869!2.30e-32!32;UBERON:0003056!2.58e-31!61;UBERON:0007023!3.72e-30!115;UBERON:0000033!4.02e-27!123;UBERON:0004121!1.88e-26!169;UBERON:0000924!1.11e-25!173;UBERON:0006601!1.11e-25!173;UBERON:0000153!1.42e-25!129;UBERON:0007811!1.42e-25!129;UBERON:0002308!1.57e-24!9;UBERON:0000125!1.57e-24!9;UBERON:0002619!2.90e-22!22;UBERON:0001950!3.24e-20!20;UBERON:0000956!1.92e-19!25;UBERON:0000203!1.92e-19!25;UBERON:0002420!4.69e-18!9;UBERON:0007245!4.69e-18!9;UBERON:0010009!4.69e-18!9;UBERON:0010011!4.69e-18!9;UBERON:0000454!4.69e-18!9;UBERON:0009663!1.48e-16!7;UBERON:0000988!6.32e-15!3;UBERON:0003076!7.59e-15!15;UBERON:0003057!7.59e-15!15;UBERON:0002298!1.27e-14!8;UBERON:0006331!2.05e-14!3;UBERON:0000025!8.62e-14!194;UBERON:0001875!4.65e-11!2;UBERON:0006514!4.65e-11!2;UBERON:0001897!6.24e-11!2;UBERON:0002148!2.76e-10!2;UBERON:0009662!2.76e-10!2;UBERON:0004111!7.11e-10!241;UBERON:0004733!1.06e-09!12;UBERON:0002028!1.06e-09!12;UBERON:0007277!1.06e-09!12;UBERON:0000013!1.06e-09!5;UBERON:0002410!1.06e-09!5;UBERON:0000483!2.10e-09!309;UBERON:0000119!3.02e-09!312;UBERON:0000475!3.95e-09!365;UBERON:0001872!4.64e-09!5;UBERON:0004732!6.19e-09!13;UBERON:0002021!7.83e-09!5;UBERON:0000349!1.03e-08!5;UBERON:0002680!1.44e-08!9;UBERON:0001895!1.44e-08!9;UBERON:0010092!1.44e-08!9;UBERON:0000477!4.11e-08!286;UBERON:0002240!1.30e-07!3;UBERON:0000200!1.88e-07!6;UBERON:0001894!7.78e-07!7;UBERON:0006222!7.78e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.45e-40;5!UBERON:0002410;2.45e-40;5!UBERON:0001875;8.10e-26;2!UBERON:0006514;8.10e-26;2!UBERON:0000010;5.43e-23;8!UBERON:0009663;2.26e-08;7!UBERON:0002420;8.61e-07;9!UBERON:0000125;8.61e-07;9!UBERON:0007245;8.61e-07;9!UBERON:0002308;8.61e-07;9!UBERON:0010009;8.61e-07;9!UBERON:0010011;8.61e-07;9!UBERON:0000454;8.61e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0000013;2.45e-40;5!UBERON:0002410;2.45e-40;5!UBERON:0001875;8.10e-26;2!UBERON:0006514;8.10e-26;2!UBERON:0000010;5.43e-23;8!UBERON:0009663;2.26e-08;7!UBERON:0002420;8.61e-07;9!UBERON:0000125;8.61e-07;9!UBERON:0007245;8.61e-07;9!UBERON:0002308;8.61e-07;9!UBERON:0010009;8.61e-07;9!UBERON:0010011;8.61e-07;9!UBERON:0000454;8.61e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.71e-40,5;UBERON:0002410,2.71e-40,5;UBERON:0001875,7.14e-26,2;UBERON:0006514,7.14e-26,2;UBERON:0000010,5.74e-23,8;UBERON:0009663,2.18e-08,7;UBERON:0002420,8.37e-07,9;UBERON:0000125,8.37e-07,9;UBERON:0007245,8.37e-07,9;UBERON:0002308,8.37e-07,9;UBERON:0010009,8.37e-07,9;UBERON:0010011,8.37e-07,9;UBERON:0000454,8.37e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.943615861729479,0.802577647298789,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80126086612937,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496771223531068,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639471856518258,5.17559094704073,0,1.63814457288021,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.443910671357348,0,0,0,0,0,0,0,0,0,0,0,0,0.815636795721981,0.328863867814245,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.407948941145488,0,0,0,0,0,0,0,2.53397002022874,0,0,0,0,0,0,0.829169439458779,0.517164979309476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.943615861729479,0.802577647298789,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80126086612937,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496771223531068,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639471856518258,5.17559094704073,0,1.63814457288021,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.443910671357348,0,0,0,0,0,0,0,0,0,0,0,0,0.815636795721981,0.328863867814245,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.407948941145488,0,0,0,0,0,0,0,2.53397002022874,0,0,0,0,0,0,0.829169439458779,0.517164979309476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@PRCD | |short_description=p8@PRCD | ||
}} | }} |
Latest revision as of 15:44, 17 September 2015
Short description: | p8@PRCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PRCD_5end |
Coexpression cluster: | C3681_neuroblastoma_optic_teratocarcinoma_substantia_diencephalon_corpus_globus |
Association with transcript: | 459bp_to_uc002jrz.1_5end |
EntrezGene: | PRCD |
HGNC: | 32528 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.71e-40 | 5 |
autonomic nervous system | 2.71e-40 | 5 |
globus pallidus | 7.14e-26 | 2 |
pallidum | 7.14e-26 | 2 |
peripheral nervous system | 5.74e-23 | 8 |
telencephalic nucleus | 2.18e-08 | 7 |
basal ganglion | 8.37e-07 | 9 |
neural nucleus | 8.37e-07 | 9 |
nuclear complex of neuraxis | 8.37e-07 | 9 |
nucleus of brain | 8.37e-07 | 9 |
aggregate regional part of brain | 8.37e-07 | 9 |
collection of basal ganglia | 8.37e-07 | 9 |
cerebral subcortex | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 8.35e-34 | 6 |
germ cell and embryonal cancer | 4.27e-21 | 22 |
germ cell cancer | 4.27e-21 | 22 |
neuroectodermal tumor | 8.54e-21 | 10 |