FFCP PHASE1:Hg19::chr1:156084552..156084561,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt=Q3BDU5 | |UniProt=Q3BDU5 | ||
|association_with_transcript=-30bp_to_ENST00000392355_5end | |association_with_transcript=-30bp_to_ENST00000392355_5end | ||
|cluster_id=chr1:156084552..156084561,+ | |||
|coexpression_cluster_id=C1839 | |coexpression_cluster_id=C1839 | ||
|description=CAGE_peak_3_at_LMNA_5end | |description=CAGE_peak_3_at_LMNA_5end | ||
|id=chr1:156084552..156084561,+ | |id=chr1:156084552..156084561,+ | ||
|ontology_enrichment_celltype=CL:0000012!5.46e-36!682;CL:0000548!1.24e-35!679;CL:0000004!1.24e-35!679;CL:0000255!1.24e-35!679;CL:0000144!3.62e-34!625;CL:0002371!1.63e-33!591;CL:0000055!1.51e-24!180;CL:0000003!4.03e-20!722;CL:0000222!3.44e-19!119;CL:0000063!1.17e-16!578;CL:0000220!1.21e-15!246;CL:0000057!2.30e-15!75;CL:0002321!5.86e-15!248;CL:0000183!7.61e-13!59;CL:0000680!1.50e-12!57;CL:0000056!1.50e-12!57;CL:0000355!1.50e-12!57;CL:0000723!6.29e-12!436;CL:0000187!7.25e-12!54;CL:0000048!1.82e-11!430;CL:0000192!6.23e-11!42;CL:0000514!6.23e-11!42;CL:0000034!8.30e-11!444;CL:0000359!3.17e-09!32;CL:0000393!6.35e-09!60;CL:0000211!6.35e-09!60;CL:0002620!9.24e-09!23;CL:0000213!3.31e-07!57;CL:0000215!3.31e-07!57 | |ontology_enrichment_celltype=CL:0000012!5.46e-36!682;CL:0000548!1.24e-35!679;CL:0000004!1.24e-35!679;CL:0000255!1.24e-35!679;CL:0000144!3.62e-34!625;CL:0002371!1.63e-33!591;CL:0000055!1.51e-24!180;CL:0000003!4.03e-20!722;CL:0000222!3.44e-19!119;CL:0000063!1.17e-16!578;CL:0000220!1.21e-15!246;CL:0000057!2.30e-15!75;CL:0002321!5.86e-15!248;CL:0000183!7.61e-13!59;CL:0000680!1.50e-12!57;CL:0000056!1.50e-12!57;CL:0000355!1.50e-12!57;CL:0000723!6.29e-12!436;CL:0000187!7.25e-12!54;CL:0000048!1.82e-11!430;CL:0000192!6.23e-11!42;CL:0000514!6.23e-11!42;CL:0000034!8.30e-11!444;CL:0000359!3.17e-09!32;CL:0000393!6.35e-09!60;CL:0000211!6.35e-09!60;CL:0002620!9.24e-09!23;CL:0000213!3.31e-07!57;CL:0000215!3.31e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002620;7.44e-09;23!CL:0000359;8.67e-09;32!CL:0000192;3.23e-08;43!CL:0000860;3.48e-07;33!CL:0002057;3.48e-07;33!CL:0000187;6.12e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.69e-19,121;CL:0000057,2.02e-15,76;CL:0002321,6.65e-15,250;CL:0000723,1.38e-12,433;CL:0000680,1.46e-12,58;CL:0000056,1.46e-12,58;CL:0000355,1.46e-12,58;CL:0000048,4.59e-12,427;CL:0000187,7.16e-12,55;CL:0000034,2.72e-11,441;CL:0000192,6.69e-11,43;CL:0000514,6.69e-11,43;CL:0000359,2.66e-09,32;CL:0000393,5.98e-09,61;CL:0000211,5.98e-09,61;CL:0002620,7.82e-09,23;CL:0000213,2.95e-07,58;CL:0000215,2.95e-07,58;CL:0000076,9.10e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000514;3.23e-08;43!CL:0000355;4.51e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.80e-18!448;UBERON:0004120!7.80e-18!448;UBERON:0006603!7.80e-18!448;UBERON:0000914!1.57e-16!83;UBERON:0002329!1.57e-16!83;UBERON:0003077!1.57e-16!83;UBERON:0003059!1.57e-16!83;UBERON:0007282!1.57e-16!83;UBERON:0009618!1.57e-16!83;UBERON:0007285!1.57e-16!83;UBERON:0000486!2.52e-16!82;UBERON:0004290!3.25e-15!70;UBERON:0002204!1.30e-14!167;UBERON:0001981!3.22e-14!60;UBERON:0007500!3.22e-14!60;UBERON:0004537!3.22e-14!60;UBERON:0006965!3.22e-14!60;UBERON:0001637!3.78e-14!42;UBERON:0003509!3.78e-14!42;UBERON:0004572!3.78e-14!42;UBERON:0000055!3.05e-13!69;UBERON:0002049!7.56e-13!79;UBERON:0007798!7.56e-13!79;UBERON:0004872!1.17e-12!84;UBERON:0005256!3.87e-12!143;UBERON:0003081!4.66e-12!216;UBERON:0001134!2.33e-11!61;UBERON:0002036!2.33e-11!61;UBERON:0003082!2.33e-11!61;UBERON:0003914!1.05e-10!118;UBERON:0002385!1.30e-10!63;UBERON:0001015!1.30e-10!63;UBERON:0000383!1.30e-10!63;UBERON:0004573!3.06e-10!33;UBERON:0004571!3.06e-10!33;UBERON:0003102!3.53e-10!95;UBERON:0002199!6.69e-10!45;UBERON:0002416!6.69e-10!45;UBERON:0002100!4.22e-09!216;UBERON:0000490!4.97e-09!138;UBERON:0002097!6.01e-09!40;UBERON:0000467!1.31e-08!625;UBERON:0000468!1.39e-08!659;UBERON:0000480!2.12e-08!626;UBERON:0003104!4.62e-08!238;UBERON:0009142!4.62e-08!238;UBERON:0004535!5.60e-07!110 | |ontology_enrichment_uberon=UBERON:0000926!7.80e-18!448;UBERON:0004120!7.80e-18!448;UBERON:0006603!7.80e-18!448;UBERON:0000914!1.57e-16!83;UBERON:0002329!1.57e-16!83;UBERON:0003077!1.57e-16!83;UBERON:0003059!1.57e-16!83;UBERON:0007282!1.57e-16!83;UBERON:0009618!1.57e-16!83;UBERON:0007285!1.57e-16!83;UBERON:0000486!2.52e-16!82;UBERON:0004290!3.25e-15!70;UBERON:0002204!1.30e-14!167;UBERON:0001981!3.22e-14!60;UBERON:0007500!3.22e-14!60;UBERON:0004537!3.22e-14!60;UBERON:0006965!3.22e-14!60;UBERON:0001637!3.78e-14!42;UBERON:0003509!3.78e-14!42;UBERON:0004572!3.78e-14!42;UBERON:0000055!3.05e-13!69;UBERON:0002049!7.56e-13!79;UBERON:0007798!7.56e-13!79;UBERON:0004872!1.17e-12!84;UBERON:0005256!3.87e-12!143;UBERON:0003081!4.66e-12!216;UBERON:0001134!2.33e-11!61;UBERON:0002036!2.33e-11!61;UBERON:0003082!2.33e-11!61;UBERON:0003914!1.05e-10!118;UBERON:0002385!1.30e-10!63;UBERON:0001015!1.30e-10!63;UBERON:0000383!1.30e-10!63;UBERON:0004573!3.06e-10!33;UBERON:0004571!3.06e-10!33;UBERON:0003102!3.53e-10!95;UBERON:0002199!6.69e-10!45;UBERON:0002416!6.69e-10!45;UBERON:0002100!4.22e-09!216;UBERON:0000490!4.97e-09!138;UBERON:0002097!6.01e-09!40;UBERON:0000467!1.31e-08!625;UBERON:0000468!1.39e-08!659;UBERON:0000480!2.12e-08!626;UBERON:0003104!4.62e-08!238;UBERON:0009142!4.62e-08!238;UBERON:0004535!5.60e-07!110 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.58e-10;42!UBERON:0003509;1.58e-10;42!UBERON:0004572;1.58e-10;42!UBERON:0007500;2.58e-09;56!UBERON:0001981;2.58e-09;56!UBERON:0004537;2.58e-09;56!UBERON:0004573;3.15e-09;33!UBERON:0004571;3.15e-09;33!UBERON:0003102;1.45e-07;50!UBERON:0002097;2.92e-07;41!UBERON:0003914;3.08e-07;74!UBERON:0002199;3.29e-07;46!UBERON:0002416;3.29e-07;46!UBERON:0000055;5.88e-07;65 | |||
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| ||
|short_description=p3@LMNA | |short_description=p3@LMNA | ||
}} | }} |
Latest revision as of 14:58, 17 September 2015
Short description: | p3@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LMNA_5end |
Coexpression cluster: | C1839_Mast_immature_Fibroblast_Mesenchymal_Hair_tenocyte_Keratocytes |
Association with transcript: | -30bp_to_ENST00000392355_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | Q3BDU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.69e-19 | 121 |
fibroblast | 2.02e-15 | 76 |
embryonic cell | 6.65e-15 | 250 |
somatic stem cell | 1.38e-12 | 433 |
muscle precursor cell | 1.46e-12 | 58 |
myoblast | 1.46e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.46e-12 | 58 |
multi fate stem cell | 4.59e-12 | 427 |
muscle cell | 7.16e-12 | 55 |
stem cell | 2.72e-11 | 441 |
smooth muscle cell | 6.69e-11 | 43 |
smooth muscle myoblast | 6.69e-11 | 43 |
vascular associated smooth muscle cell | 2.66e-09 | 32 |
electrically responsive cell | 5.98e-09 | 61 |
electrically active cell | 5.98e-09 | 61 |
skin fibroblast | 7.82e-09 | 23 |
lining cell | 2.95e-07 | 58 |
barrier cell | 2.95e-07 | 58 |
squamous epithelial cell | 9.10e-07 | 63 |