FFCP PHASE1:Hg19::chr16:69139543..69139585,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3038 | |EntrezGene=3038 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4820 | |HGNC=4820 | ||
|TSSclassifier=strong | |||
|UniProt=O00219 | |UniProt=O00219 | ||
|association_with_transcript=76bp_to_NM_001199280,uc010cfh.2_5end | |association_with_transcript=76bp_to_NM_001199280,uc010cfh.2_5end | ||
|cluster_id=chr16:69139543..69139585,+ | |||
|coexpression_cluster_id=C130 | |||
|description=CAGE_peak_2_at_HAS3_5end | |description=CAGE_peak_2_at_HAS3_5end | ||
|id=chr16:69139543..69139585,+ | |id=chr16:69139543..69139585,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.66e-21!254;CL:0002076!2.11e-13!43;CL:0000223!3.67e-11!59;CL:0002368!2.36e-08!13;CL:0002321!7.13e-08!248;CL:0002202!2.07e-07!9;CL:0002632!2.07e-07!9;CL:0002322!2.92e-07!5;CL:0002251!3.78e-07!21;CL:0000220!3.87e-07!246 | |ontology_enrichment_celltype=CL:0000066!1.66e-21!254;CL:0002076!2.11e-13!43;CL:0000223!3.67e-11!59;CL:0002368!2.36e-08!13;CL:0002321!7.13e-08!248;CL:0002202!2.07e-07!9;CL:0002632!2.07e-07!9;CL:0002322!2.92e-07!5;CL:0002251!3.78e-07!21;CL:0000220!3.87e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.45e-18;5!CL:0000244;7.10e-08;4!CL:0000731;7.10e-08;4!CL:0002159;9.08e-08;14!CL:0000575;2.98e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.10e-18,5;CL:0000066,6.39e-12,253;CL:0000244,6.32e-08,4;CL:0000731,6.32e-08,4;CL:0002159,7.82e-08,14;CL:0000575,1.83e-07,2;CL:0000047,2.67e-07,8;CL:0002076,3.16e-07,42;CL:0000221,6.51e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.14e-14!106;DOID:1749!7.80e-10!14;DOID:0050687!2.47e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000464!2.35e-12!104;UBERON:0001004!9.42e-12!72;UBERON:0004119!2.52e-11!169;UBERON:0000925!2.52e-11!169;UBERON:0006595!2.52e-11!169;UBERON:0005181!5.22e-10!35;UBERON:0000466!1.17e-09!126;UBERON:0005153!2.05e-09!37;UBERON:0005178!2.28e-09!34;UBERON:0002224!2.28e-09!34;UBERON:0001007!3.37e-09!155;UBERON:0001555!3.37e-09!155;UBERON:0007026!3.37e-09!155;UBERON:0006554!4.90e-08!44;UBERON:0000161!5.67e-08!35;UBERON:0005157!7.69e-08!51;UBERON:0005911!9.43e-08!82;UBERON:0000065!9.49e-08!53;UBERON:0001008!1.07e-07!45;UBERON:0000475!2.80e-07!365;UBERON:0000481!4.52e-07!347;UBERON:0002048!4.75e-07!22;UBERON:0000117!4.75e-07!22;UBERON:0000171!4.75e-07!22;UBERON:0000170!4.75e-07!22;UBERON:0005597!4.75e-07!22;UBERON:0000118!4.75e-07!22;UBERON:0005177!5.66e-07!107;UBERON:0004921!9.85e-07!129;UBERON:0004185!9.85e-07!129 | |ontology_enrichment_uberon=UBERON:0000464!2.35e-12!104;UBERON:0001004!9.42e-12!72;UBERON:0004119!2.52e-11!169;UBERON:0000925!2.52e-11!169;UBERON:0006595!2.52e-11!169;UBERON:0005181!5.22e-10!35;UBERON:0000466!1.17e-09!126;UBERON:0005153!2.05e-09!37;UBERON:0005178!2.28e-09!34;UBERON:0002224!2.28e-09!34;UBERON:0001007!3.37e-09!155;UBERON:0001555!3.37e-09!155;UBERON:0007026!3.37e-09!155;UBERON:0006554!4.90e-08!44;UBERON:0000161!5.67e-08!35;UBERON:0005157!7.69e-08!51;UBERON:0005911!9.43e-08!82;UBERON:0000065!9.49e-08!53;UBERON:0001008!1.07e-07!45;UBERON:0000475!2.80e-07!365;UBERON:0000481!4.52e-07!347;UBERON:0002048!4.75e-07!22;UBERON:0000117!4.75e-07!22;UBERON:0000171!4.75e-07!22;UBERON:0000170!4.75e-07!22;UBERON:0005597!4.75e-07!22;UBERON:0000118!4.75e-07!22;UBERON:0005177!5.66e-07!107;UBERON:0004921!9.85e-07!129;UBERON:0004185!9.85e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0005910;8.74e-09;6!UBERON:0000922;1.62e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005910,1.08e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0.602694528023977,0,0,0.369363174230364,0.408001382488506,0,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0.919421224478927,2.409647350226,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.0654895377488563,1.82147644146271,1.48313777113772,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,2.61656431285521,0,0.12663051166458,0.264818361626438,0,0,0,2.1349799145941,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0.358779271377724,0,0,0.300091096084402,0,0,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0.57978255948989,0.818238361772504,1.43402297694502,6.95250124938694,3.97589304964456,5.11253348625881,4.04278114559945,7.0649838245176,1.09493207722749,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96325770603289,0,1.60846355858609,3.33318402570707,0,0,0,0,0.117408694235822,0.866198686566443,1.85194205030644,0.761016608938393,0,0,0,0,0,0,0.16798212819886,1.13420077793909,0.0895585227028483,1.45316969256981,1.15014803749563,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0.241718899183244,1.20303882181971,0.368323955743585,0.114814448164607,0,0,0,0.616122696835318,0.784349769176855,2.92278449306521,1.16106791782163,0,0.170093705276516,0,0,0.270946437543853,0.501689773854853,0,1.66215201785745,1.11937377361089,0,0,0,0,0,0,0.0915694648183434,0,0,2.60024098414608,0,0,0,0.15350367472613,0,0,0,0,0,0.495854746082934,0.192190067365106,0.893288987462089,0,0.464845549297286,0.31481234683064,0,0.616067160352178,0,0,0,1.00187420719394,0,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0.844430541190656,0,0,0,0.673554789078584,1.34060455107157,2.17781969722645,0.0941438007767792,1.29151611801369,1.68471475667626,2.66058092122005,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0.637705090915289,0,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0,0,0,0,0.890469640183247,0,0,0,0,0,0.102268682502155,0,0,0,0.358042349351218,0,0.295930216910801,0,0,0,0,1.99613798001194,0,0,0.724999575434793,1.593108275997,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,8.3654246567162,0.307801034015188,0.455768223388005,0,0.628303510868405,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0,7.17393419395292,0,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0.234264445725339,0,0.978323094660449,0,0,0,1.83643656978294,0,0,0.207376382794494,0,0.330991955875499,0,0,0,0,0,0.881931576729399,0.957651272384428,0,0.171986032471617,0,0.146178634172371,0,1.16386819786103,0,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0.14405479798815,0,1.64985824231757,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0,0,0,10.1274483532962,9.7652999984036,8.72424709861289,0,0,0,3.35434687599266,0.0788057072991982,0.0524545881349981,0.105600336519406,0,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,0.314408610199332,0,0,0,0,3.83004754662109,0,0,0,0,0.942324577501406,0,0,0,0,0,0,0.276697269872462,3.49945142293898,0,0,0.235265819698172,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0.265841714557995,0,0.601030435988874,0,0,0,0,0,0.398095888698616,0.400027764663154,0,0,0,0,0.214441591374926,0,0.226705925512272,0.231522474323834,0,0.179088841081487,0,0,0,0,0,1.53744911152768,0,0,0,0,0,0,0,0,1.26787274015176,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0.352675943690684,0,0.192687675289379,0,0,0.205116364240755,1.76450187355203,0.207471757392654,0,0,1.57036349601641,0.353909170043221,2.93485757634686,0.115525666150338,0,0,0,0,0,0,0.523813388962845,0,0.443568258651136,0,0,0,0,3.28184885410932,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0,0,0.945550727071746,3.55940486054621,0,0,0,0,0.431855182437243,0.9555033757741,0.0714765441766563,0.158013611732727,0,0,0,0.828864656652147,0.17071847709395,0,0.860454717640555,0,0,0,0,0,1.91107787795487,0.782988022584546,0.196300467230486,0,0,0,0,0,0.467878926924211,0,0.118920090777569,0.90356865631168,0.329821550236287,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0.240724100067505,0,0,0,0,0,1.30905207102113,1.0580536810308,0,0,0,0.504665699340316,0.764859003745869,0.760191006068622,1.22386595690378,6.41321772637345,0.551369397209069,3.50990555009325,0,0,0,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0.33639558774184,0,0.202117188958219,1.74173398317569,0.342233301085281,0.942928742204225,0.573777643141411,0.665320713092027,0.0814032686109745,1.06727345877715,0,0.538951212639521,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0.602694528023977,0,0,0.369363174230364,0.408001382488506,0,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0.919421224478927,2.409647350226,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.0654895377488563,1.82147644146271,1.48313777113772,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,2.61656431285521,0,0.12663051166458,0.264818361626438,0,0,0,2.1349799145941,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0.358779271377724,0,0,0.300091096084402,0,0,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0.57978255948989,0.818238361772504,1.43402297694502,6.95250124938694,3.97589304964456,5.11253348625881,4.04278114559945,7.0649838245176,1.09493207722749,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96325770603289,0,1.60846355858609,3.33318402570707,0,0,0,0,0.117408694235822,0.866198686566443,1.85194205030644,0.761016608938393,0,0,0,0,0,0,0.16798212819886,1.13420077793909,0.0895585227028483,1.45316969256981,1.15014803749563,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0.241718899183244,1.20303882181971,0.368323955743585,0.114814448164607,0,0,0,0.616122696835318,0.784349769176855,2.92278449306521,1.16106791782163,0,0.170093705276516,0,0,0.270946437543853,0.501689773854853,0,1.66215201785745,1.11937377361089,0,0,0,0,0,0,0.0915694648183434,0,0,2.60024098414608,0,0,0,0.15350367472613,0,0,0,0,0,0.495854746082934,0.192190067365106,0.893288987462089,0,0.464845549297286,0.31481234683064,0,0.616067160352178,0,0,0,1.00187420719394,0,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0.844430541190656,0,0,0,0.673554789078584,1.34060455107157,2.17781969722645,0.0941438007767792,1.29151611801369,1.68471475667626,2.66058092122005,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0.637705090915289,0,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0,0,0,0,0.890469640183247,0,0,0,0,0,0.102268682502155,0,0,0,0.358042349351218,0,0.295930216910801,0,0,0,0,1.99613798001194,0,0,0.724999575434793,1.593108275997,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,8.3654246567162,0.307801034015188,0.455768223388005,0,0.628303510868405,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0,7.17393419395292,0,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0.234264445725339,0,0.978323094660449,0,0,0,1.83643656978294,0,0,0.207376382794494,0,0.330991955875499,0,0,0,0,0,0.881931576729399,0.957651272384428,0,0.171986032471617,0,0.146178634172371,0,1.16386819786103,0,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0.14405479798815,0,1.64985824231757,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0,0,0,10.1274483532962,9.7652999984036,8.72424709861289,0,0,0,3.35434687599266,0.0788057072991982,0.0524545881349981,0.105600336519406,0,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,0.314408610199332,0,0,0,0,3.83004754662109,0,0,0,0,0.942324577501406,0,0,0,0,0,0,0.276697269872462,3.49945142293898,0,0,0.235265819698172,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0.265841714557995,0,0.601030435988874,0,0,0,0,0,0.398095888698616,0.400027764663154,0,0,0,0,0.214441591374926,0,0.226705925512272,0.231522474323834,0,0.179088841081487,0,0,0,0,0,1.53744911152768,0,0,0,0,0,0,0,0,1.26787274015176,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0.352675943690684,0,0.192687675289379,0,0,0.205116364240755,1.76450187355203,0.207471757392654,0,0,1.57036349601641,0.353909170043221,2.93485757634686,0.115525666150338,0,0,0,0,0,0,0.523813388962845,0,0.443568258651136,0,0,0,0,3.28184885410932,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0,0,0.945550727071746,3.55940486054621,0,0,0,0,0.431855182437243,0.9555033757741,0.0714765441766563,0.158013611732727,0,0,0,0.828864656652147,0.17071847709395,0,0.860454717640555,0,0,0,0,0,1.91107787795487,0.782988022584546,0.196300467230486,0,0,0,0,0,0.467878926924211,0,0.118920090777569,0.90356865631168,0.329821550236287,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0.240724100067505,0,0,0,0,0,1.30905207102113,1.0580536810308,0,0,0,0.504665699340316,0.764859003745869,0.760191006068622,1.22386595690378,6.41321772637345,0.551369397209069,3.50990555009325,0,0,0,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0.33639558774184,0,0.202117188958219,1.74173398317569,0.342233301085281,0.942928742204225,0.573777643141411,0.665320713092027,0.0814032686109745,1.06727345877715,0,0.538951212639521,0,0,0,0,0,0 | ||
|short_description=p2@HAS3 | |short_description=p2@HAS3 | ||
}} | }} |
Latest revision as of 14:28, 17 September 2015
Short description: | p2@HAS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HAS3_5end |
Coexpression cluster: | C130_iPS_HES3GFP_H9_teratocarcinoma_testicular_colon_Alveolar |
Association with transcript: | 76bp_to_NM_001199280, uc010cfh.2_5end |
EntrezGene: | HAS3 |
HGNC: | 4820 |
UniProt: | O00219 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.10e-18 | 5 |
epithelial cell | 6.39e-12 | 253 |
transitional epithelial cell | 6.32e-08 | 4 |
urothelial cell | 6.32e-08 | 4 |
general ecto-epithelial cell | 7.82e-08 | 14 |
corneal epithelial cell | 1.83e-07 | 2 |
neuronal stem cell | 2.67e-07 | 8 |
endo-epithelial cell | 3.16e-07 | 42 |
ectodermal cell | 6.51e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
transitional epithelium | 1.08e-08 | 6 |