FFCP PHASE1:Hg19::chr11:27742115..27742119,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=627 | |EntrezGene=627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |HGNC=1033 | ||
|TSSclassifier=strong | |||
|UniProt=P23560 | |UniProt=P23560 | ||
|association_with_transcript=150bp_to_ENST00000395978,ENST00000395981_5end | |association_with_transcript=150bp_to_ENST00000395978,ENST00000395981_5end | ||
|cluster_id=chr11:27742115..27742119,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_17_at_BDNF_5end | |description=CAGE_peak_17_at_BDNF_5end | ||
|id=chr11:27742115..27742119,- | |id=chr11:27742115..27742119,- | ||
|ontology_enrichment_celltype=CL:0000242!4.12e-09!2 | |ontology_enrichment_celltype=CL:0000242!4.12e-09!2 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.06e-99;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002680;4.07e-91;9!UBERON:0001895;4.07e-91;9!UBERON:0004733;1.45e-68;12!UBERON:0002028;1.45e-68;12!UBERON:0004732;2.34e-63;13!UBERON:0002037;3.84e-50;6!UBERON:0000988;2.38e-44;3!UBERON:0002298;8.47e-23;6!UBERON:0002148;1.07e-17;2!UBERON:0006331;1.07e-17;2!UBERON:0009662;1.07e-17;2!UBERON:0000073;2.86e-10;53!UBERON:0002616;2.86e-10;53!UBERON:0001016;2.72e-07;83!UBERON:0000955;5.85e-07;68 | |||
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| ||
|short_description=p17@BDNF | |short_description=p17@BDNF | ||
}} | }} |
Latest revision as of 12:37, 17 September 2015
Short description: | p17@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_BDNF_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 150bp_to_ENST00000395978, ENST00000395981_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 4.91e-91 | 9 |
metencephalon | 4.91e-91 | 9 |
future metencephalon | 4.91e-91 | 9 |
segmental subdivision of hindbrain | 1.67e-68 | 12 |
hindbrain | 1.67e-68 | 12 |
presumptive hindbrain | 1.67e-68 | 12 |
segmental subdivision of nervous system | 2.67e-63 | 13 |
posterior neural tube | 5.67e-55 | 15 |
chordal neural plate | 5.67e-55 | 15 |
cerebellum | 3.84e-50 | 6 |
rhombic lip | 3.84e-50 | 6 |
pons | 2.97e-44 | 3 |
brainstem | 9.46e-23 | 6 |
locus ceruleus | 1.27e-17 | 2 |
brainstem nucleus | 1.27e-17 | 2 |
hindbrain nucleus | 1.27e-17 | 2 |
regional part of nervous system | 9.69e-16 | 53 |
regional part of brain | 9.69e-16 | 53 |
neural tube | 6.12e-15 | 56 |
neural rod | 6.12e-15 | 56 |
future spinal cord | 6.12e-15 | 56 |
neural keel | 6.12e-15 | 56 |
brain | 2.95e-12 | 68 |
future brain | 2.95e-12 | 68 |
central nervous system | 2.09e-10 | 81 |
neural plate | 2.09e-10 | 82 |
presumptive neural plate | 2.09e-10 | 82 |
neurectoderm | 6.00e-10 | 86 |
nervous system | 1.98e-09 | 89 |
ecto-epithelium | 2.61e-08 | 104 |
adult organism | 1.11e-07 | 114 |