FFCP PHASE1:Hg19::chr11:27723059..27723067,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=627 | |EntrezGene=627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |HGNC=1033 | ||
|TSSclassifier=strong | |||
|UniProt=P23560 | |UniProt=P23560 | ||
|association_with_transcript=112bp_to_ENST00000395980,NM_170733,uc001mrv.2_5end | |association_with_transcript=112bp_to_ENST00000395980,NM_170733,uc001mrv.2_5end | ||
|cluster_id=chr11:27723059..27723067,- | |||
|coexpression_cluster_id=C1630 | |coexpression_cluster_id=C1630 | ||
|description=CAGE_peak_11_at_BDNF_5end | |description=CAGE_peak_11_at_BDNF_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000055!3.59e-11!180;CL:0000057!1.11e-09!75;CL:1000306!1.78e-09!4;CL:0002547!1.78e-09!4;CL:0000192!1.72e-07!42;CL:0000514!1.72e-07!42 | |ontology_enrichment_celltype=CL:0000055!3.59e-11!180;CL:0000057!1.11e-09!75;CL:1000306!1.78e-09!4;CL:0002547!1.78e-09!4;CL:0000192!1.72e-07!42;CL:0000514!1.72e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002595;2.85e-30;5!CL:0002593;1.33e-09;2!CL:0000359;1.80e-08;32!CL:0000346;8.14e-07;3!CL:1000428;8.14e-07;3!CL:0000632;8.14e-07;3 | |ontology_enrichment_celltype_v019=CL:0002595;2.85e-30;5!CL:0002593;1.33e-09;2!CL:0000359;1.80e-08;32!CL:0000346;8.14e-07;3!CL:1000428;8.14e-07;3!CL:0000632;8.14e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002595,2.86e-30,5;CL:0002593,1.71e-09,2;CL:0000359,1.23e-08,32;CL:0000632,7.70e-07,3;CL:0000346,8.62e-07,3;CL:1000428,8.62e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4235;7.36e-18;1!DOID:3571;7.36e-18;1!DOID:3350;1.33e-09;2!DOID:3307;1.33e-09;2 | |ontology_enrichment_disease_v019=DOID:4235;7.36e-18;1!DOID:3571;7.36e-18;1!DOID:3350;1.33e-09;2!DOID:3307;1.33e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4235,4.44e-18,1;DOID:3571,6.23e-18,1;DOID:3307,9.46e-10,2;DOID:3350,1.22e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0000415!1.78e-09!4;UBERON:0007240!1.78e-09!4;UBERON:0005742!1.78e-09!4;UBERON:0005734!1.78e-09!4;UBERON:0004664!1.78e-09!4;UBERON:0004663!1.78e-09!4 | |ontology_enrichment_uberon=UBERON:0000415!1.78e-09!4;UBERON:0007240!1.78e-09!4;UBERON:0005742!1.78e-09!4;UBERON:0005734!1.78e-09!4;UBERON:0004664!1.78e-09!4;UBERON:0004663!1.78e-09!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0003834;2.85e-30;5!UBERON:0001533;2.85e-30;5!UBERON:0003513;7.56e-22;7!UBERON:0002456;1.33e-09;2!UBERON:0004573;9.49e-08;33!UBERON:0004571;9.49e-08;33!UBERON:0000412;8.14e-07;3!UBERON:0001992;8.14e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0003834;2.85e-30;5!UBERON:0001533;2.85e-30;5!UBERON:0003513;7.56e-22;7!UBERON:0002456;1.33e-09;2!UBERON:0004573;9.49e-08;33!UBERON:0004571;9.49e-08;33!UBERON:0000412;8.14e-07;3!UBERON:0001992;8.14e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,2.86e-30,5;UBERON:0001533,2.86e-30,5;UBERON:0003513,7.57e-22,7;UBERON:0002456,1.71e-09,2;UBERON:0004573,2.21e-08,33;UBERON:0004571,2.21e-08,33;UBERON:0000412,8.62e-07,3;UBERON:0001992,8.62e-07,3 | |||
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| ||
|short_description=p11@BDNF | |short_description=p11@BDNF | ||
}} | }} |
Latest revision as of 12:29, 17 September 2015
Short description: | p11@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_BDNF_5end |
Coexpression cluster: | C1630_Smooth_Fibroblast_mesenchymal_Chondrocyte_Nucleus_Anulus_Preadipocyte |
Association with transcript: | 112bp_to_ENST00000395980, NM_170733, uc001mrv.2_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 2.86e-30 | 5 |
smooth muscle cell of the internal thoracic artery | 1.71e-09 | 2 |
vascular associated smooth muscle cell | 1.23e-08 | 32 |
hepatic stellate cell | 7.70e-07 | 3 |
hair follicle dermal papilla cell | 8.62e-07 | 3 |
stem cell of epidermis | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 2.86e-30 | 5 |
subclavian artery | 2.86e-30 | 5 |
trunk blood vessel | 7.57e-22 | 7 |
internal thoracic artery | 1.71e-09 | 2 |
systemic artery | 2.21e-08 | 33 |
systemic arterial system | 2.21e-08 | 33 |
dermal papilla | 8.62e-07 | 3 |
papillary layer of dermis | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 4.44e-18 | 1 |
liver cancer | 6.23e-18 | 1 |
teratoma | 9.46e-10 | 2 |
mesenchymal cell neoplasm | 1.22e-09 | 2 |