FFCP PHASE1:Hg19::chr2:47630255..47630333,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4436 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7325 | |||
|TSSclassifier=strong | |||
|UniProt=E9PHA6,E9PCI8,E7EU21,E7EQQ1,P43246,Q53RU4,Q0ZAJ2 | |||
|association_with_transcript=0bp_to_ENST00000394792,ENST00000406134,ENST00000419559,ENST00000422810,ENST00000432737,ENST00000448533,ENST00000453755,NM_000251,uc002rvy.1,uc002rvz.2,uc010fbf.1_5end | |||
|cluster_id=chr2:47630255..47630333,+ | |||
|coexpression_cluster_id=C4236 | |||
|description=CAGE_peak_1_at_MSH2_5end | |||
|id=chr2:47630255..47630333,+ | |||
|ontology_enrichment_celltype=CL:0002319!8.36e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;6.30e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,8.34e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!8.44e-43!235;DOID:14566!7.60e-41!239;DOID:0050687!6.41e-26!143;DOID:305!1.45e-22!106;DOID:0050686!6.03e-21!137;DOID:2531!1.93e-14!51;DOID:0060083!1.93e-14!51;DOID:1240!7.60e-12!39;DOID:8692!1.53e-10!31;DOID:3095!2.69e-07!22;DOID:2994!2.69e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.36e-10;31!DOID:1240;1.04e-09;39!DOID:2531;1.43e-09;51!DOID:0060083;1.43e-09;51!DOID:305;5.77e-08;106!DOID:3095;2.35e-07;22!DOID:2994;2.35e-07;22!DOID:0050687;5.91e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.28e-43,235;DOID:14566,7.47e-41,239;DOID:0050687,6.34e-26,143;DOID:305,1.43e-22,106;DOID:0050686,5.98e-21,137;DOID:2531,1.92e-14,51;DOID:0060083,1.92e-14,51;DOID:1240,7.57e-12,39;DOID:8692,1.52e-10,31;DOID:3095,2.68e-07,22;DOID:2994,2.68e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.03e-13!94;UBERON:0001016!4.03e-13!94;UBERON:0005743!2.46e-12!86;UBERON:0001017!2.50e-12!82;UBERON:0000955!9.72e-10!69;UBERON:0006238!9.72e-10!69;UBERON:0002780!2.21e-09!41;UBERON:0001890!2.21e-09!41;UBERON:0006240!2.21e-09!41;UBERON:0001049!9.09e-09!57;UBERON:0005068!9.09e-09!57;UBERON:0006241!9.09e-09!57;UBERON:0007135!9.09e-09!57;UBERON:0003080!1.11e-08!42;UBERON:0001869!1.39e-08!32;UBERON:0002020!1.48e-08!34;UBERON:0003528!1.48e-08!34;UBERON:0001893!3.17e-08!34;UBERON:0002791!4.20e-08!33;UBERON:0002616!1.42e-07!59;UBERON:0002346!2.93e-07!90;UBERON:0003056!7.62e-07!61;UBERON:0003075!8.35e-07!86;UBERON:0007284!8.35e-07!86;UBERON:0000956!9.79e-07!25;UBERON:0000203!9.79e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.52e-08;32!UBERON:0002791;7.48e-08;32!UBERON:0003528;9.37e-08;34!UBERON:0002020;9.37e-08;34!UBERON:0001893;2.64e-07;34!UBERON:0002780;5.87e-07;41!UBERON:0001890;5.87e-07;41!UBERON:0000956;9.61e-07;25!UBERON:0000203;9.61e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.10e-13,89;UBERON:0001017,6.36e-13,81;UBERON:0011216,6.72e-11,223;UBERON:0000955,2.68e-10,68;UBERON:0006238,2.68e-10,68;UBERON:0000073,2.20e-09,53;UBERON:0002616,2.20e-09,53;UBERON:0002780,2.21e-09,41;UBERON:0001890,2.21e-09,41;UBERON:0003080,2.21e-09,41;UBERON:0006240,2.21e-09,41;UBERON:0001049,2.35e-09,56;UBERON:0005068,2.35e-09,56;UBERON:0006241,2.35e-09,56;UBERON:0007135,2.35e-09,56;UBERON:0001869,1.38e-08,32;UBERON:0003528,1.48e-08,34;UBERON:0002020,1.48e-08,34;UBERON:0002791,2.20e-08,32;UBERON:0001893,3.16e-08,34;UBERON:0002346,4.09e-07,86;UBERON:0003056,4.58e-07,61;UBERON:0000956,9.77e-07,25;UBERON:0000203,9.77e-07,25 | |||
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| |||
|short_description=p1@MSH2 | |||
}} |
Latest revision as of 12:18, 17 September 2015
Short description: | p1@MSH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MSH2_5end |
Coexpression cluster: | C4236_retinoblastoma_iPS_small_testicular_HES3GFP_teratocarcinoma_rhabdomyosarcoma |
Association with transcript: | 0bp_to_ENST00000394792, ENST00000406134, ENST00000419559, ENST00000422810, ENST00000432737, ENST00000448533, ENST00000453755, NM_000251, uc002rvy.1, uc002rvz.2, uc010fbf.1_5end |
EntrezGene: | MSH2 |
HGNC: | 7325 |
UniProt: | E9PHA6E9PCI8E7EU21E7EQQ1P43246Q53RU4Q0ZAJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 8.34e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.10e-13 | 89 |
central nervous system | 6.36e-13 | 81 |
organ system subdivision | 6.72e-11 | 223 |
brain | 2.68e-10 | 68 |
future brain | 2.68e-10 | 68 |
regional part of nervous system | 2.20e-09 | 53 |
regional part of brain | 2.20e-09 | 53 |
regional part of forebrain | 2.21e-09 | 41 |
forebrain | 2.21e-09 | 41 |
anterior neural tube | 2.21e-09 | 41 |
future forebrain | 2.21e-09 | 41 |
neural tube | 2.35e-09 | 56 |
neural rod | 2.35e-09 | 56 |
future spinal cord | 2.35e-09 | 56 |
neural keel | 2.35e-09 | 56 |
cerebral hemisphere | 1.38e-08 | 32 |
brain grey matter | 1.48e-08 | 34 |
gray matter | 1.48e-08 | 34 |
regional part of telencephalon | 2.20e-08 | 32 |
telencephalon | 3.16e-08 | 34 |
neurectoderm | 4.09e-07 | 86 |
pre-chordal neural plate | 4.58e-07 | 61 |
cerebral cortex | 9.77e-07 | 25 |
pallium | 9.77e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.28e-43 | 235 |
disease of cellular proliferation | 7.47e-41 | 239 |
cell type cancer | 6.34e-26 | 143 |
carcinoma | 1.43e-22 | 106 |
organ system cancer | 5.98e-21 | 137 |
hematologic cancer | 1.92e-14 | 51 |
immune system cancer | 1.92e-14 | 51 |
leukemia | 7.57e-12 | 39 |
myeloid leukemia | 1.52e-10 | 31 |
germ cell and embryonal cancer | 2.68e-07 | 22 |
germ cell cancer | 2.68e-07 | 22 |