FFCP PHASE1:Hg19::chr2:47335914..47335927,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=801,805,808 | |EntrezGene=801,805,808 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1442,1445,1449 | |HGNC=1442,1445,1449 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000464527,ENST00000482548_5end | |association_with_transcript=0bp_to_ENST00000464527,ENST00000482548_5end | ||
|cluster_id=chr2:47335914..47335927,- | |||
|description=CAGE_peak_25_at_CALM2_5end,CAGE_peak_31_at_CALM3_5end,CAGE_peak_45_at_CALM1_5end | |description=CAGE_peak_25_at_CALM2_5end,CAGE_peak_31_at_CALM3_5end,CAGE_peak_45_at_CALM1_5end | ||
|id=chr2:47335914..47335927,- | |id=chr2:47335914..47335927,- | ||
|ontology_enrichment_celltype=CL:0002178!2.24e-11!3;CL:0000066!4.05e-09!254;CL:0002251!4.81e-09!21;CL:0000223!7.48e-08!59;CL:0002076!3.08e-07!43 | |ontology_enrichment_celltype=CL:0002178!2.24e-11!3;CL:0000066!4.05e-09!254;CL:0002251!4.81e-09!21;CL:0000223!7.48e-08!59;CL:0002076!3.08e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002178;1.00e-16;3!CL:0002379;3.54e-13;1!CL:0002251;1.34e-09;20!CL:1000415;2.50e-07;2!CL:0002097;4.42e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.00e-16,3;CL:0002379,3.76e-13,1;CL:0000066,7.09e-10,253;CL:0002251,1.40e-09,20;CL:1000415,2.58e-07,2;CL:0002097,4.69e-07,2;CL:0002076,6.41e-07,42;CL:0000223,6.82e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.98e-16!106;DOID:299!8.56e-12!25;DOID:0050687!1.87e-11!143;DOID:1749!5.52e-11!14;DOID:162!2.29e-10!235;DOID:14566!5.70e-10!239;DOID:3119!2.97e-08!14;DOID:3493!6.72e-08!2;DOID:3908!2.90e-07!5 | |ontology_enrichment_disease=DOID:305!1.98e-16!106;DOID:299!8.56e-12!25;DOID:0050687!1.87e-11!143;DOID:1749!5.52e-11!14;DOID:162!2.29e-10!235;DOID:14566!5.70e-10!239;DOID:3119!2.97e-08!14;DOID:3493!6.72e-08!2;DOID:3908!2.90e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:3908;3.09e-22;5!DOID:4556;6.22e-17;3!DOID:3620;3.54e-13;1!DOID:3565;3.54e-13;1!DOID:1799;6.82e-13;1!DOID:10165;6.82e-13;1!DOID:3111;6.82e-13;1!DOID:1798;6.82e-13;1!DOID:3603;6.82e-13;1!DOID:3905;1.24e-12;9!DOID:299;1.00e-11;25!DOID:305;8.73e-09;106!DOID:170;1.22e-08;6!DOID:3119;3.38e-08;14!DOID:1324;8.66e-08;15!DOID:3910;2.15e-07;2!DOID:3493;2.28e-07;2!DOID:0050615;2.48e-07;16!DOID:4929;2.82e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,2.88e-22,5;DOID:305,4.93e-17,106;DOID:4556,5.75e-17,3;DOID:3620,3.76e-13,1;DOID:3565,3.76e-13,1;DOID:3111,5.38e-13,1;DOID:3603,5.38e-13,1;DOID:1799,1.09e-12,1;DOID:10165,1.09e-12,1;DOID:1798,1.09e-12,1;DOID:3905,1.19e-12,9;DOID:0050687,3.56e-12,143;DOID:299,9.57e-12,25;DOID:170,1.47e-08,6;DOID:3119,3.42e-08,14;DOID:162,6.69e-08,235;DOID:1324,8.46e-08,15;DOID:14566,1.07e-07,239;DOID:3910,2.15e-07,2;DOID:3493,2.28e-07,2;DOID:0050615,2.43e-07,16;DOID:4929,2.91e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000344!1.74e-09!12;UBERON:0004119!1.99e-08!169;UBERON:0000925!1.99e-08!169;UBERON:0006595!1.99e-08!169;UBERON:0003343!5.47e-08!4;UBERON:0004785!5.47e-08!4;UBERON:0000077!4.84e-07!130;UBERON:0005911!7.57e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;8.31e-16;7!UBERON:0001173;8.31e-16;7!UBERON:0004913;2.78e-13;1!UBERON:0003703;2.78e-13;1!UBERON:0001174;2.78e-13;1!UBERON:0004914;2.78e-13;1!UBERON:0002394;1.07e-12;4!UBERON:0003928;1.07e-12;4!UBERON:0000058;2.79e-11;10!UBERON:0000945;2.04e-10;5!UBERON:0010039;2.04e-10;5!UBERON:0005409;1.95e-08;22!UBERON:0004903;2.15e-07;2!UBERON:0002173;2.15e-07;2!UBERON:0002186;2.15e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,2.95e-13,1;UBERON:0003703,2.95e-13,1;UBERON:0001174,2.95e-13,1;UBERON:0004914,2.95e-13,1;UBERON:0002294,1.84e-12,9;UBERON:0001173,1.84e-12,9;UBERON:0004912,1.84e-12,9;UBERON:0002394,8.24e-09,6;UBERON:0003928,8.24e-09,6;UBERON:0005911,2.36e-08,82;UBERON:0005409,1.86e-07,25;UBERON:0004903,2.15e-07,2;UBERON:0002173,2.15e-07,2;UBERON:0002186,2.15e-07,2;UBERON:0004119,2.20e-07,160;UBERON:0000925,2.20e-07,160;UBERON:0006595,2.20e-07,160;UBERON:0000945,7.88e-07,8;UBERON:0010039,7.88e-07,8;UBERON:0001007,8.44e-07,145;UBERON:0001555,8.44e-07,145;UBERON:0007026,8.44e-07,145 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886860307073351,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0,0,0.222886768554957,0,0,1.78178808499583,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,1.61763032065188,0,0,0,0,0,0,0,0,0,0,0,0,6.35634125731916,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0.448788222048861,0,0,0,0,0,0,0,0,0.19606253431774,0.167821586975843,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435296032902013,0,0,0,0,0,0,0,0,0,0,0,4.10657903743086,0,0,1.19885765749278,0.576361668616424,0,0,0,0,0,0.951329442515298,0.732219924186332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164831716762333,0.0674035438541849,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,3.48481110514041,0,4.79787993298613,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82318983637806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15571898244382,0,0,0,0,0.97894681802587,0,0,0,0,0,0,0,0,0,0,0,0,0.327130788511688,0,0,1.47918486351039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,1.28400018965175,0.346576998451015,0,0,0,0,0,0,1.04762677792569,0,3.10497781055795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.556157009460346,0.313972371402056,0,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0.31020638566432,0,0,5.30011261522312,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p25@CALM2,p31@CALM3,p45@CALM1 | |short_description=p25@CALM2,p31@CALM3,p45@CALM1 | ||
}} | }} |
Latest revision as of 11:47, 17 September 2015
Short description: | p25@CALM2, p31@CALM3, p45@CALM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_CALM2_5end, CAGE_peak_31_at_CALM3_5end, CAGE_peak_45_at_CALM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000464527, ENST00000482548_5end |
EntrezGene: | 801,805,808 |
HGNC: | 1445, 1449&submit=Submit 1442, 1445, 1449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.00e-16 | 3 |
meningothelial cell | 3.76e-13 | 1 |
epithelial cell | 7.09e-10 | 253 |
epithelial cell of alimentary canal | 1.40e-09 | 20 |
epithelial cell of gall bladder | 2.58e-07 | 2 |
cortical cell of adrenal gland | 4.69e-07 | 2 |
endo-epithelial cell | 6.41e-07 | 42 |
endodermal cell | 6.82e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 2.95e-13 | 1 |
extrahepatic bile duct | 2.95e-13 | 1 |
common bile duct | 2.95e-13 | 1 |
duodenal papilla | 2.95e-13 | 1 |
biliary system | 1.84e-12 | 9 |
biliary tree | 1.84e-12 | 9 |
biliary bud | 1.84e-12 | 9 |
bile duct | 8.24e-09 | 6 |
digestive system duct | 8.24e-09 | 6 |
endo-epithelium | 2.36e-08 | 82 |
gastrointestinal system | 1.86e-07 | 25 |
bronchoalveolar duct junction | 2.15e-07 | 2 |
alveolar duct | 2.15e-07 | 2 |
bronchiole | 2.15e-07 | 2 |
endoderm-derived structure | 2.20e-07 | 160 |
endoderm | 2.20e-07 | 160 |
presumptive endoderm | 2.20e-07 | 160 |
stomach | 7.88e-07 | 8 |
food storage organ | 7.88e-07 | 8 |
digestive system | 8.44e-07 | 145 |
digestive tract | 8.44e-07 | 145 |
primitive gut | 8.44e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 2.88e-22 | 5 |
carcinoma | 4.93e-17 | 106 |
lung large cell carcinoma | 5.75e-17 | 3 |
central nervous system cancer | 3.76e-13 | 1 |
meningioma | 3.76e-13 | 1 |
cystadenocarcinoma | 5.38e-13 | 1 |
mucinous cystadenocarcinoma | 5.38e-13 | 1 |
islet cell tumor | 1.09e-12 | 1 |
endocrine pancreas cancer | 1.09e-12 | 1 |
pancreatic endocrine carcinoma | 1.09e-12 | 1 |
lung carcinoma | 1.19e-12 | 9 |
cell type cancer | 3.56e-12 | 143 |
adenocarcinoma | 9.57e-12 | 25 |
endocrine gland cancer | 1.47e-08 | 6 |
gastrointestinal system cancer | 3.42e-08 | 14 |
cancer | 6.69e-08 | 235 |
lung cancer | 8.46e-08 | 15 |
disease of cellular proliferation | 1.07e-07 | 239 |
lung adenocarcinoma | 2.15e-07 | 2 |
signet ring cell adenocarcinoma | 2.28e-07 | 2 |
respiratory system cancer | 2.43e-07 | 16 |
tubular adenocarcinoma | 2.91e-07 | 2 |