FFCP PHASE1:Hg19::chr13:45694574..45694578,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:45694574..45694578,+ to FFCP PHASE1:Hg19::chr13:45694574..45694578,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2963 | |EntrezGene=2963 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4653 | |HGNC=4653 | ||
|TSSclassifier=strong | |||
|UniProt=P13984 | |UniProt=P13984 | ||
|association_with_transcript=-52bp_to_NM_004128,uc001uzv.2,uc001uzw.2_5end | |||
|cluster_id=chr13:45694574..45694578,+ | |||
|description=CAGE_peak_6_at_GTF2F2_5end | |||
|id=chr13:45694574..45694578,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000228;8.93e-20;1!CL:0002372;8.93e-20;1!CL:0002174;2.47e-19;1!CL:0000501;2.47e-19;1!CL:0000047;2.37e-10;2!CL:1000487;2.37e-10;2!CL:0002573;2.55e-07;2!CL:0000174;2.55e-07;3!CL:0002605;2.55e-07;3!CL:0000346;2.55e-07;3!CL:1000428;2.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,8.95e-20,1;CL:0002372,8.95e-20,1;CL:0002174,2.71e-19,1;CL:0000501,2.71e-19,1;CL:1000487,3.27e-10,2;CL:0002573,1.93e-07,2;CL:0000346,2.19e-07,3;CL:1000428,2.19e-07,3;CL:0000174,2.63e-07,3;CL:0002605,2.97e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0005795;3.62e-08;10 | |||
|ontology_enrichment_disease=DOID:1749!6.33e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:0060084;6.20e-25;3!DOID:127;6.20e-25;3!DOID:0060072;5.63e-19;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.38e-25,3;DOID:127,3.38e-25,3;DOID:0060072,3.57e-19,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001875;2.37e-10;2!UBERON:0006514;2.37e-10;2!UBERON:0000412;2.55e-07;3!UBERON:0001992;2.55e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001875,2.72e-10,2;UBERON:0006514,2.72e-10,2;UBERON:0000412,2.19e-07,3;UBERON:0001992,2.19e-07,3 | |||
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| ||
|short_description=p6@GTF2F2 | |||
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Latest revision as of 11:45, 17 September 2015
Short description: | p6@GTF2F2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GTF2F2_5end |
Coexpression cluster: | NA |
Association with transcript: | -52bp_to_NM_004128, uc001uzv.2, uc001uzw.2_5end |
EntrezGene: | GTF2F2 |
HGNC: | 4653 |
UniProt: | P13984 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 8.95e-20 | 1 |
myotube | 8.95e-20 | 1 |
follicular cell of ovary | 2.71e-19 | 1 |
granulosa cell | 2.71e-19 | 1 |
smooth muscle cell of prostate | 3.27e-10 | 2 |
Schwann cell | 1.93e-07 | 2 |
hair follicle dermal papilla cell | 2.19e-07 | 3 |
stem cell of epidermis | 2.19e-07 | 3 |
steroid hormone secreting cell | 2.63e-07 | 3 |
astrocyte of the cerebral cortex | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
globus pallidus | 2.72e-10 | 2 |
pallidum | 2.72e-10 | 2 |
dermal papilla | 2.19e-07 | 3 |
papillary layer of dermis | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.38e-25 | 3 |
leiomyoma | 3.38e-25 | 3 |
benign neoplasm | 3.57e-19 | 4 |