FFCP PHASE1:Hg19::chr1:154943142..154943157,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:154943142..154943157,- to FFCP PHASE1:Hg19::chr1:154943142..154943157,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6464 | |EntrezGene=6464 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10840 | |HGNC=10840 | ||
|TSSclassifier=strong | |||
|UniProt=P29353 | |UniProt=P29353 | ||
|association_with_transcript=59bp_to_ENST00000368445_5end | |||
|cluster_id=chr1:154943142..154943157,- | |||
|coexpression_cluster_id=C2529 | |||
|description=CAGE_peak_3_at_SHC1_5end | |||
|id=chr1:154943142..154943157,- | |||
|ontology_enrichment_celltype=CL:0000055!3.01e-34!180;CL:0000220!5.68e-31!246;CL:0002321!3.12e-30!248;CL:0000222!1.29e-23!119;CL:0000183!2.31e-19!59;CL:0000680!1.36e-18!57;CL:0000056!1.36e-18!57;CL:0000355!1.36e-18!57;CL:0000187!1.83e-17!54;CL:0000057!1.13e-15!75;CL:0000192!2.43e-15!42;CL:0000514!2.43e-15!42;CL:0000393!6.18e-15!60;CL:0000211!6.18e-15!60;CL:0000144!4.10e-14!625;CL:0002371!9.49e-14!591;CL:0000359!1.32e-13!32;CL:0000548!3.34e-12!679;CL:0000004!3.34e-12!679;CL:0000255!3.34e-12!679;CL:0000012!1.34e-11!682;CL:0002494!1.20e-07!16;CL:0000066!2.06e-07!254;CL:0000213!4.24e-07!57;CL:0000215!4.24e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.07e-13;32!CL:0000192;2.21e-11;43!CL:0000187;2.94e-10;55!CL:0002494;8.06e-08;16!CL:0000393;1.02e-07;61!CL:0000211;1.02e-07;61!CL:0000057;2.30e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.11e-30,250;CL:0000222,3.42e-25,121;CL:0000680,3.77e-19,58;CL:0000056,3.77e-19,58;CL:0000355,3.77e-19,58;CL:0000187,5.49e-18,55;CL:0000057,2.51e-16,76;CL:0000192,8.97e-16,43;CL:0000514,8.97e-16,43;CL:0000393,2.07e-15,61;CL:0000211,2.07e-15,61;CL:0000359,5.49e-14,32;CL:0000213,7.31e-08,58;CL:0000215,7.31e-08,58;CL:0002494,7.65e-08,16;CL:0000066,7.09e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;2.21e-11;43!CL:0000355;2.04e-10;58!CL:0000222;3.14e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.45e-23!82;UBERON:0005256!8.62e-23!143;UBERON:0000475!2.01e-22!365;UBERON:0002100!2.16e-21!216;UBERON:0000914!7.15e-21!83;UBERON:0002329!7.15e-21!83;UBERON:0003077!7.15e-21!83;UBERON:0003059!7.15e-21!83;UBERON:0007282!7.15e-21!83;UBERON:0009618!7.15e-21!83;UBERON:0007285!7.15e-21!83;UBERON:0002049!3.15e-19!79;UBERON:0007798!3.15e-19!79;UBERON:0004290!3.31e-19!70;UBERON:0003914!1.42e-18!118;UBERON:0000119!1.53e-18!312;UBERON:0000483!3.86e-18!309;UBERON:0004872!4.25e-18!84;UBERON:0000055!2.92e-17!69;UBERON:0001134!1.96e-16!61;UBERON:0002036!1.96e-16!61;UBERON:0003082!1.96e-16!61;UBERON:0003104!3.98e-16!238;UBERON:0009142!3.98e-16!238;UBERON:0000490!4.60e-16!138;UBERON:0000481!8.36e-16!347;UBERON:0002385!1.67e-15!63;UBERON:0001015!1.67e-15!63;UBERON:0000383!1.67e-15!63;UBERON:0001981!1.78e-15!60;UBERON:0007500!1.78e-15!60;UBERON:0004537!1.78e-15!60;UBERON:0006965!1.78e-15!60;UBERON:0004535!1.87e-14!110;UBERON:0001637!3.98e-14!42;UBERON:0003509!3.98e-14!42;UBERON:0004572!3.98e-14!42;UBERON:0003102!9.15e-14!95;UBERON:0001009!9.64e-14!113;UBERON:0000468!2.22e-13!659;UBERON:0000477!6.55e-13!286;UBERON:0004573!1.33e-11!33;UBERON:0004571!1.33e-11!33;UBERON:0000480!2.33e-11!626;UBERON:0004111!4.18e-11!241;UBERON:0000467!4.19e-11!625;UBERON:0002199!1.17e-09!45;UBERON:0002416!1.17e-09!45;UBERON:0002050!7.76e-09!605;UBERON:0005423!7.76e-09!605;UBERON:0000923!8.24e-09!604;UBERON:0005291!8.24e-09!604;UBERON:0006598!8.24e-09!604;UBERON:0002532!8.24e-09!604;UBERON:0000922!1.66e-08!612;UBERON:0002097!4.36e-08!40;UBERON:0009569!4.36e-07!113;UBERON:0000025!5.62e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;9.57e-11;33!UBERON:0004571;9.57e-11;33!UBERON:0001637;2.82e-10;42!UBERON:0003509;2.82e-10;42!UBERON:0004572;2.82e-10;42!UBERON:0007500;7.43e-09;56!UBERON:0001981;7.43e-09;56!UBERON:0004537;7.43e-09;56!UBERON:0002049;2.15e-08;75!UBERON:0007798;2.15e-08;75!UBERON:0000055;2.78e-08;65!UBERON:0003914;4.04e-08;74!UBERON:0003102;4.35e-07;50!UBERON:0002097;9.55e-07;41!UBERON:0002199;9.66e-07;46!UBERON:0002416;9.66e-07;46 | |||
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| ||
|short_description=p3@SHC1 | |||
}} | }} |
Latest revision as of 10:45, 17 September 2015
Short description: | p3@SHC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHC1_5end |
Coexpression cluster: | C2529_Mesenchymal_Corneal_Urothelial_Cardiac_salivary_Sebocyte_Esophageal |
Association with transcript: | 59bp_to_ENST00000368445_5end |
EntrezGene: | SHC1 |
HGNC: | 10840 |
UniProt: | P29353 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.11e-30 | 250 |
mesodermal cell | 3.42e-25 | 121 |
muscle precursor cell | 3.77e-19 | 58 |
myoblast | 3.77e-19 | 58 |
multi-potent skeletal muscle stem cell | 3.77e-19 | 58 |
muscle cell | 5.49e-18 | 55 |
fibroblast | 2.51e-16 | 76 |
smooth muscle cell | 8.97e-16 | 43 |
smooth muscle myoblast | 8.97e-16 | 43 |
electrically responsive cell | 2.07e-15 | 61 |
electrically active cell | 2.07e-15 | 61 |
vascular associated smooth muscle cell | 5.49e-14 | 32 |
lining cell | 7.31e-08 | 58 |
barrier cell | 7.31e-08 | 58 |
cardiocyte | 7.65e-08 | 16 |
epithelial cell | 7.09e-07 | 253 |