FFCP PHASE1:Hg19::chr1:28844730..28844776,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1104 | |EntrezGene=1104 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1913 | |HGNC=1913 | ||
|TSSclassifier=strong | |||
|UniProt=P18754,E9PAT9,Q5T081 | |UniProt=P18754,E9PAT9,Q5T081 | ||
|association_with_transcript=0bp_to_ENST00000373831,NM_001048194,NM_001048195,NM_001269,uc001bqe.1,uc001bqf.1,uc001bqg.1_5end | |association_with_transcript=0bp_to_ENST00000373831,NM_001048194,NM_001048195,NM_001269,uc001bqe.1,uc001bqf.1,uc001bqg.1_5end | ||
|cluster_id=chr1:28844730..28844776,+ | |||
|coexpression_cluster_id=C3964 | |||
|description=CAGE_peak_2_at_RCC1_5end | |description=CAGE_peak_2_at_RCC1_5end | ||
|id=chr1:28844730..28844776,+ | |id=chr1:28844730..28844776,+ | ||
|ontology_enrichment_celltype=CL:0000548!2.65e-28!679;CL:0000004!2.65e-28!679;CL:0000255!2.65e-28!679;CL:0000012!2.86e-28!682;CL:0000066!6.79e-28!254;CL:0000003!4.74e-17!722;CL:0000063!2.49e-15!578;CL:0002321!5.60e-14!248;CL:0000220!1.62e-13!246;CL:0000144!5.98e-11!625;CL:0000076!3.88e-09!62;CL:0002371!9.95e-09!591 | |ontology_enrichment_celltype=CL:0000548!2.65e-28!679;CL:0000004!2.65e-28!679;CL:0000255!2.65e-28!679;CL:0000012!2.86e-28!682;CL:0000066!6.79e-28!254;CL:0000003!4.74e-17!722;CL:0000063!2.49e-15!578;CL:0002321!5.60e-14!248;CL:0000220!1.62e-13!246;CL:0000144!5.98e-11!625;CL:0000076!3.88e-09!62;CL:0002371!9.95e-09!591 | ||
|ontology_enrichment_celltype_v019=CL:1000497;3.92e-07;17!CL:0002518;3.92e-07;17!CL:1000449;5.14e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.99e-28,253;CL:0002321,3.44e-14,250;CL:0000076,8.32e-09,63;CL:1000497,4.55e-07,17;CL:0002518,4.55e-07,17;CL:1000449,5.42e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.53e-33!235;DOID:14566!4.62e-32!239;DOID:2531!3.14e-18!51;DOID:0060083!3.14e-18!51;DOID:0050686!6.01e-18!137;DOID:305!1.63e-17!106;DOID:0050687!1.39e-16!143;DOID:1240!1.07e-14!39;DOID:8692!8.85e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;6.52e-12;39!DOID:8692;1.67e-11;31!DOID:2531;2.54e-11;51!DOID:0060083;2.54e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.53e-33,235;DOID:14566,4.63e-32,239;DOID:2531,2.80e-18,51;DOID:0060083,2.80e-18,51;DOID:0050686,6.51e-18,137;DOID:305,1.46e-17,106;DOID:0050687,1.51e-16,143;DOID:1240,9.82e-15,39;DOID:8692,8.26e-12,31 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.37e-08!238;UBERON:0009142!1.37e-08!238;UBERON:0000072!1.49e-08!46;UBERON:0001737!4.19e-07!9;UBERON:0008947!4.43e-07!38;UBERON:0003258!4.43e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;7.90e-08;37!UBERON:0001737;3.81e-07;9!UBERON:0001557;3.81e-07;9!UBERON:0006555;5.14e-07;15!UBERON:0004819;5.14e-07;15!UBERON:0001285;5.14e-07;15!UBERON:0007684;5.14e-07;15!UBERON:0002113;8.27e-07;24!UBERON:0011143;8.27e-07;24!UBERON:0001851;9.49e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000072,3.37e-08,47;UBERON:0008947,4.00e-07,38;UBERON:0003258,4.00e-07,38;UBERON:0001737,4.03e-07,9;UBERON:0004211,5.42e-07,15;UBERON:0009773,5.42e-07,15;UBERON:0001231,5.42e-07,15;UBERON:0001285,5.42e-07,15;UBERON:0007684,5.42e-07,15;UBERON:0004208,5.42e-07,15 | |||
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| ||
|short_description=p2@RCC1 | |short_description=p2@RCC1 | ||
}} | }} |
Latest revision as of 10:34, 17 September 2015
Short description: | p2@RCC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RCC1_5end |
Coexpression cluster: | C3964_chronic_Mesenchymal_hepatocellular_hereditary_acute_rhabdomyosarcoma_Skeletal |
Association with transcript: | 0bp_to_ENST00000373831, NM_001048194, NM_001048195, NM_001269, uc001bqe.1, uc001bqf.1, uc001bqg.1_5end |
EntrezGene: | RCC1 |
HGNC: | 1913 |
UniProt: | P18754E9PAT9Q5T081 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.99e-28 | 253 |
embryonic cell | 3.44e-14 | 250 |
squamous epithelial cell | 8.32e-09 | 63 |
kidney cell | 4.55e-07 | 17 |
kidney epithelial cell | 4.55e-07 | 17 |
epithelial cell of nephron | 5.42e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
segment of respiratory tract | 3.37e-08 | 47 |
respiratory primordium | 4.00e-07 | 38 |
endoderm of foregut | 4.00e-07 | 38 |
larynx | 4.03e-07 | 9 |
nephron epithelium | 5.42e-07 | 15 |
renal tubule | 5.42e-07 | 15 |
nephron tubule | 5.42e-07 | 15 |
nephron | 5.42e-07 | 15 |
uriniferous tubule | 5.42e-07 | 15 |
nephrogenic mesenchyme | 5.42e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.53e-33 | 235 |
disease of cellular proliferation | 4.63e-32 | 239 |
hematologic cancer | 2.80e-18 | 51 |
immune system cancer | 2.80e-18 | 51 |
organ system cancer | 6.51e-18 | 137 |
carcinoma | 1.46e-17 | 106 |
cell type cancer | 1.51e-16 | 143 |
leukemia | 9.82e-15 | 39 |
myeloid leukemia | 8.26e-12 | 31 |