FFCP PHASE1:Hg19::chr1:28832548..28832568,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1104 | |EntrezGene=1104 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1913,10118 | |HGNC=1913,10118 | ||
|TSSclassifier=strong | |||
|UniProt=P18754,C9J3R0 | |UniProt=P18754,C9J3R0 | ||
|association_with_transcript=0bp_to_ENST00000373833,ENST00000434290,ENST00000447507_5end | |association_with_transcript=0bp_to_ENST00000373833,ENST00000434290,ENST00000447507_5end | ||
|cluster_id=chr1:28832548..28832568,+ | |||
|description=CAGE_peak_1_at_RCC1_5end,CAGE_peak_1_at_SNHG3_5end | |description=CAGE_peak_1_at_RCC1_5end,CAGE_peak_1_at_SNHG3_5end | ||
|id=chr1:28832548..28832568,+ | |id=chr1:28832548..28832568,+ | ||
|ontology_enrichment_celltype=CL:0000012!5.94e-32!682;CL:0000548!1.04e-29!679;CL:0000004!1.04e-29!679;CL:0000255!1.04e-29!679;CL:0000003!2.08e-29!722;CL:0000063!2.97e-21!578;CL:0000144!1.14e-18!625;CL:0000542!9.00e-15!53;CL:0000051!9.00e-15!53;CL:0002371!1.47e-14!591;CL:0000838!2.90e-14!52;CL:0000945!2.01e-10!24;CL:0000826!2.01e-10!24;CL:0000034!4.85e-09!444;CL:0000066!7.29e-09!254;CL:0000723!2.89e-07!436;CL:0000048!4.11e-07!430 | |ontology_enrichment_celltype=CL:0000012!5.94e-32!682;CL:0000548!1.04e-29!679;CL:0000004!1.04e-29!679;CL:0000255!1.04e-29!679;CL:0000003!2.08e-29!722;CL:0000063!2.97e-21!578;CL:0000144!1.14e-18!625;CL:0000542!9.00e-15!53;CL:0000051!9.00e-15!53;CL:0002371!1.47e-14!591;CL:0000838!2.90e-14!52;CL:0000945!2.01e-10!24;CL:0000826!2.01e-10!24;CL:0000034!4.85e-09!444;CL:0000066!7.29e-09!254;CL:0000723!2.89e-07!436;CL:0000048!4.11e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000945;2.03e-10;24!CL:0000542;4.39e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.00e-15,53;CL:0000051,9.00e-15,53;CL:0000838,2.90e-14,52;CL:0000945,2.01e-10,24;CL:0000826,2.01e-10,24;CL:0000066,5.62e-09,253;CL:0000034,3.99e-08,441 | |||
|ontology_enrichment_development_v019=CL:0000051;4.39e-09;53 | |||
|ontology_enrichment_disease=DOID:162!3.91e-22!235;DOID:14566!1.10e-20!239;DOID:2531!4.73e-20!51;DOID:0060083!4.73e-20!51;DOID:1240!5.98e-15!39;DOID:0050686!3.63e-14!137;DOID:8692!1.44e-11!31;DOID:0050687!4.48e-08!143;DOID:305!4.54e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:2531;1.84e-12;51!DOID:0060083;1.84e-12;51!DOID:1240;2.59e-12;39!DOID:8692;3.23e-11;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.91e-22,235;DOID:14566,1.10e-20,239;DOID:2531,4.73e-20,51;DOID:0060083,4.73e-20,51;DOID:1240,5.98e-15,39;DOID:0050686,3.63e-14,137;DOID:8692,1.44e-11,31;DOID:0050687,4.48e-08,143;DOID:305,4.54e-08,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@RCC1,p1@SNHG3 | |short_description=p1@RCC1,p1@SNHG3 | ||
}} | }} |
Latest revision as of 10:26, 17 September 2015
Short description: | p1@RCC1, p1@SNHG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RCC1_5end, CAGE_peak_1_at_SNHG3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373833, ENST00000434290, ENST00000447507_5end |
EntrezGene: | RCC1 |
HGNC: | 10118&submit=Submit 1913, 10118 |
UniProt: | P18754C9J3R0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.00e-15 | 53 |
common lymphoid progenitor | 9.00e-15 | 53 |
lymphoid lineage restricted progenitor cell | 2.90e-14 | 52 |
lymphocyte of B lineage | 2.01e-10 | 24 |
pro-B cell | 2.01e-10 | 24 |
epithelial cell | 5.62e-09 | 253 |
stem cell | 3.99e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.91e-22 | 235 |
disease of cellular proliferation | 1.10e-20 | 239 |
hematologic cancer | 4.73e-20 | 51 |
immune system cancer | 4.73e-20 | 51 |
leukemia | 5.98e-15 | 39 |
organ system cancer | 3.63e-14 | 137 |
myeloid leukemia | 1.44e-11 | 31 |
cell type cancer | 4.48e-08 | 143 |
carcinoma | 4.54e-08 | 106 |