FFCP PHASE1:Hg19::chr1:154540180..154540198,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:154540180..154540198,-
|short_description=p1@AB593149
|description=CAGE_peak_1_at_AB593149_5end
|association_with_transcript=0bp_to_AB593149_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=F1T0K9 | |UniProt=F1T0K9 | ||
|association_with_transcript=0bp_to_AB593149_5end | |||
|cluster_id=chr1:154540180..154540198,- | |||
|description=CAGE_peak_1_at_AB593149_5end | |||
|id=chr1:154540180..154540198,- | |||
|ontology_enrichment_celltype=CL:0000540!7.93e-10!6;CL:0000031!7.93e-10!6;CL:0000404!7.93e-10!6;CL:0002322!1.14e-07!5;CL:0000047!2.90e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000123;7.43e-22;2!CL:0000242;7.43e-22;2!CL:0000333;1.59e-19;5!CL:0000167;3.45e-12;1!CL:0000164;3.45e-12;1!CL:0000502;3.45e-12;1!CL:0000172;3.45e-12;1!CL:0000173;3.45e-12;1!CL:0002553;4.78e-12;1!CL:0000312;2.57e-09;5!CL:0000240;6.60e-08;6!CL:0000311;6.60e-08;6!CL:0000079;6.60e-08;6!CL:0000237;6.60e-08;6!CL:0002321;7.20e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.41e-22,2;CL:0000167,3.65e-12,1;CL:0000164,3.65e-12,1;CL:0000502,3.65e-12,1;CL:0000172,3.65e-12,1;CL:0000173,3.65e-12,1;CL:0002351,3.65e-12,1;CL:0002553,5.05e-12,1;CL:0000312,2.27e-09,5;CL:0000333,2.01e-08,41;CL:0000240,5.95e-08,6;CL:0000311,5.95e-08,6;CL:0000079,5.95e-08,6;CL:0000237,5.95e-08,6;CL:0000036,5.95e-08,6;CL:0000357,5.95e-08,6;CL:0000114,5.95e-08,6;CL:0000133,9.19e-08,59 | |||
|ontology_enrichment_development_v019=CL:0002351;3.45e-12;1!CL:0000357;6.60e-08;6!CL:0000114;6.60e-08;6 | |||
|ontology_enrichment_disease=DOID:169!6.03e-11!6;DOID:171!9.95e-09!10;DOID:3095!2.12e-07!22;DOID:2994!2.12e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:169;1.96e-28;6!DOID:171;3.40e-17;10!DOID:4430;3.45e-12;1!DOID:3095;6.25e-08;22!DOID:2994;6.25e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.64e-28,6;DOID:171,3.07e-17,10;DOID:4430,3.65e-12,1;DOID:3095,5.97e-08,22;DOID:2994,5.97e-08,22;DOID:0050687,2.36e-07,143 | |||
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|ontology_enrichment_uberon_v019=UBERON:0003296;2.34e-24;4!UBERON:0010133;2.34e-24;4!UBERON:0000007;2.30e-22;2!UBERON:0000013;1.59e-19;5!UBERON:0002410;1.59e-19;5!UBERON:0001894;3.39e-14;7!UBERON:0000010;4.08e-11;8!UBERON:0002780;2.11e-07;41!UBERON:0001890;2.11e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.78e-24,4;UBERON:0010133,1.78e-24,4;UBERON:0000007,1.85e-22,2;UBERON:0000013,1.31e-19,5;UBERON:0002410,1.31e-19,5;UBERON:0001894,2.90e-14,7;UBERON:0006222,2.90e-14,7;UBERON:0001016,3.81e-12,89;UBERON:0000010,3.68e-11,8;UBERON:0002780,1.51e-08,41;UBERON:0001890,1.51e-08,41;UBERON:0003080,1.51e-08,41;UBERON:0006240,1.51e-08,41;UBERON:0004121,3.34e-08,171;UBERON:0000924,3.34e-08,171;UBERON:0006601,3.34e-08,171;UBERON:0003056,1.43e-07,61;UBERON:0001017,4.23e-07,81;UBERON:0010371,6.95e-07,104 | |||
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| ||
|short_description=p1@AB593149 | |||
}} | }} |
Latest revision as of 09:36, 17 September 2015
Short description: | p1@AB593149 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AB593149_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AB593149_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.41e-22 | 2 |
peptide hormone secreting cell | 3.65e-12 | 1 |
enteroendocrine cell | 3.65e-12 | 1 |
type D enteroendocrine cell | 3.65e-12 | 1 |
somatostatin secreting cell | 3.65e-12 | 1 |
pancreatic D cell | 3.65e-12 | 1 |
progenitor cell of endocrine pancreas | 3.65e-12 | 1 |
lung fibroblast | 5.05e-12 | 1 |
keratinocyte | 2.27e-09 | 5 |
migratory neural crest cell | 2.01e-08 | 41 |
stratified squamous epithelial cell | 5.95e-08 | 6 |
keratin accumulating cell | 5.95e-08 | 6 |
stratified epithelial cell | 5.95e-08 | 6 |
keratinizing barrier epithelial cell | 5.95e-08 | 6 |
epithelial fate stem cell | 5.95e-08 | 6 |
stratified epithelial stem cell | 5.95e-08 | 6 |
surface ectodermal cell | 5.95e-08 | 6 |
neurectodermal cell | 9.19e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 1.78e-24 | 4 |
neuroendocrine gland | 1.78e-24 | 4 |
pituitary gland | 1.85e-22 | 2 |
sympathetic nervous system | 1.31e-19 | 5 |
autonomic nervous system | 1.31e-19 | 5 |
diencephalon | 2.90e-14 | 7 |
future diencephalon | 2.90e-14 | 7 |
nervous system | 3.81e-12 | 89 |
peripheral nervous system | 3.68e-11 | 8 |
regional part of forebrain | 1.51e-08 | 41 |
forebrain | 1.51e-08 | 41 |
anterior neural tube | 1.51e-08 | 41 |
future forebrain | 1.51e-08 | 41 |
ectoderm-derived structure | 3.34e-08 | 171 |
ectoderm | 3.34e-08 | 171 |
presumptive ectoderm | 3.34e-08 | 171 |
pre-chordal neural plate | 1.43e-07 | 61 |
central nervous system | 4.23e-07 | 81 |
ecto-epithelium | 6.95e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.64e-28 | 6 |
neuroectodermal tumor | 3.07e-17 | 10 |
somatostatinoma | 3.65e-12 | 1 |
germ cell and embryonal cancer | 5.97e-08 | 22 |
germ cell cancer | 5.97e-08 | 22 |
cell type cancer | 2.36e-07 | 143 |