FFCP PHASE1:Hg19::chr20:59827263..59827327,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:59827263..59827327,+ to FFCP PHASE1:Hg19::chr20:59827263..59827327,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1002 | |EntrezGene=1002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1763 | |HGNC=1763 | ||
|TSSclassifier=strong | |||
|UniProt=P55283 | |UniProt=P55283 | ||
|association_with_transcript=-154bp_to_NM_001794_5end | |||
|cluster_id=chr20:59827263..59827327,+ | |||
|description=CAGE_peak_1_at_CDH4_5end | |||
|id=chr20:59827263..59827327,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.33e-11!248;CL:0000220!1.80e-11!246;CL:0000055!3.03e-10!180;CL:1000449!4.46e-09!16;CL:0000221!2.10e-08!71;CL:0000222!1.54e-07!119;CL:1000507!1.83e-07!12;CL:1000494!1.83e-07!12;CL:0000077!1.92e-07!19;CL:0002681!3.86e-07!13;CL:0002584!3.86e-07!13;CL:1000497!4.16e-07!18;CL:0002518!4.16e-07!18;CL:0000057!5.87e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.06e-09;15!CL:1000497;9.27e-08;17!CL:0002518;9.27e-08;17!CL:0002681;1.51e-07;12!CL:0002584;1.51e-07;12!CL:1000507;1.89e-07;10!CL:1000494;1.89e-07;10!CL:0000077;3.41e-07;19!CL:0002319;6.40e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.31e-11,250;CL:1000449,9.31e-10,15;CL:0000221,6.64e-08,72;CL:1000497,8.35e-08,17;CL:0002518,8.35e-08,17;CL:0002681,1.35e-07,12;CL:0002584,1.35e-07,12;CL:1000507,1.62e-07,10;CL:1000494,1.62e-07,10;CL:0000077,3.48e-07,19;CL:0002319,5.62e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.68e-25!365;UBERON:0000119!8.72e-23!312;UBERON:0000924!2.44e-22!173;UBERON:0006601!2.44e-22!173;UBERON:0000483!2.93e-22!309;UBERON:0004121!2.30e-21!169;UBERON:0005743!2.99e-21!86;UBERON:0001017!1.40e-20!82;UBERON:0000073!1.80e-19!94;UBERON:0001016!1.80e-19!94;UBERON:0002346!3.01e-19!90;UBERON:0003075!2.59e-18!86;UBERON:0007284!2.59e-18!86;UBERON:0000064!2.17e-17!219;UBERON:0000033!3.88e-17!123;UBERON:0001049!6.35e-17!57;UBERON:0005068!6.35e-17!57;UBERON:0006241!6.35e-17!57;UBERON:0007135!6.35e-17!57;UBERON:0003056!7.19e-17!61;UBERON:0000955!3.42e-16!69;UBERON:0006238!3.42e-16!69;UBERON:0002616!7.36e-16!59;UBERON:0002020!1.03e-15!34;UBERON:0003528!1.03e-15!34;UBERON:0001893!1.10e-15!34;UBERON:0000153!1.65e-15!129;UBERON:0007811!1.65e-15!129;UBERON:0001869!1.67e-15!32;UBERON:0002791!2.09e-15!33;UBERON:0002780!5.20e-15!41;UBERON:0001890!5.20e-15!41;UBERON:0006240!5.20e-15!41;UBERON:0003080!3.60e-14!42;UBERON:0000481!7.05e-14!347;UBERON:0000468!3.03e-13!659;UBERON:0000956!1.77e-12!25;UBERON:0000203!1.77e-12!25;UBERON:0002619!9.58e-11!22;UBERON:0000025!1.01e-10!194;UBERON:0000477!4.14e-10!286;UBERON:0000922!4.66e-10!612;UBERON:0001950!1.03e-09!20;UBERON:0000467!1.07e-09!625;UBERON:0004111!1.23e-09!241;UBERON:0002050!1.33e-09!605;UBERON:0005423!1.33e-09!605;UBERON:0000480!1.65e-09!626;UBERON:0000923!1.74e-09!604;UBERON:0005291!1.74e-09!604;UBERON:0006598!1.74e-09!604;UBERON:0002532!1.74e-09!604;UBERON:0004211!4.46e-09!16;UBERON:0001285!4.46e-09!16;UBERON:0007684!4.46e-09!16;UBERON:0003220!4.46e-09!16;UBERON:0004208!4.46e-09!16;UBERON:0004876!6.07e-09!20;UBERON:0006555!9.06e-09!17;UBERON:0005103!9.06e-09!17;UBERON:0000083!9.06e-09!17;UBERON:0009201!9.06e-09!17;UBERON:0004819!9.06e-09!17;UBERON:0006553!9.06e-09!17;UBERON:0003074!9.06e-09!17;UBERON:0003060!9.06e-09!17;UBERON:0000080!1.55e-08!18;UBERON:0002120!1.55e-08!18;UBERON:0004875!1.55e-08!18;UBERON:0005721!1.55e-08!18;UBERON:0005754!1.55e-08!18;UBERON:0007297!1.55e-08!18;UBERON:0003887!1.76e-08!21;UBERON:0005256!1.40e-07!143;UBERON:0000353!1.41e-07!17;UBERON:0009773!1.83e-07!12;UBERON:0001231!1.83e-07!12;UBERON:0004810!1.83e-07!12;UBERON:0002100!3.36e-07!216;UBERON:0001225!3.86e-07!13;UBERON:0008987!3.86e-07!13;UBERON:0001851!8.77e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.61e-15;32!UBERON:0002791;3.09e-15;32!UBERON:0003528;3.43e-15;34!UBERON:0002020;3.43e-15;34!UBERON:0001893;4.75e-15;34!UBERON:0000956;1.28e-13;25!UBERON:0000203;1.28e-13;25!UBERON:0002780;9.13e-12;41!UBERON:0001890;9.13e-12;41!UBERON:0002619;1.06e-11;22!UBERON:0000073;8.97e-11;53!UBERON:0002616;8.97e-11;53!UBERON:0001950;1.45e-10;20!UBERON:0006555;1.06e-09;15!UBERON:0004819;1.06e-09;15!UBERON:0001285;1.06e-09;15!UBERON:0007684;1.06e-09;15!UBERON:0001017;2.14e-08;75!UBERON:0000955;3.51e-08;68!UBERON:0001225;1.51e-07;12!UBERON:0008987;1.51e-07;12!UBERON:0004211;1.89e-07;10!UBERON:0009773;1.89e-07;10!UBERON:0001231;1.89e-07;10!UBERON:0004810;1.89e-07;10!UBERON:0001016;1.96e-07;83!UBERON:0000353;3.18e-07;15 | |||
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| ||
|short_description=p1@CDH4 | |||
}} | }} |
Latest revision as of 09:16, 17 September 2015
Short description: | p1@CDH4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDH4_5end |
Coexpression cluster: | NA |
Association with transcript: | -154bp_to_NM_001794_5end |
EntrezGene: | CDH4 |
HGNC: | 1763 |
UniProt: | P55283 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.31e-11 | 250 |
epithelial cell of nephron | 9.31e-10 | 15 |
ectodermal cell | 6.64e-08 | 72 |
kidney cell | 8.35e-08 | 17 |
kidney epithelial cell | 8.35e-08 | 17 |
kidney cortical cell | 1.35e-07 | 12 |
renal cortical epithelial cell | 1.35e-07 | 12 |
kidney tubule cell | 1.62e-07 | 10 |
nephron tubule epithelial cell | 1.62e-07 | 10 |
mesothelial cell | 3.48e-07 | 19 |
neural cell | 5.62e-07 | 25 |