FFCP PHASE1:Hg19::chr19:35490828..35490858,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:35490828..35490858,+
|short_description=p10@GRAMD1A
|description=CAGE_peak_10_at_GRAMD1A_5end
|association_with_transcript=-368bp_to_ENST00000504615_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57655 | |EntrezGene=57655 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29305 | |HGNC=29305 | ||
|TSSclassifier=strong | |||
|UniProt=Q96CP6 | |UniProt=Q96CP6 | ||
|association_with_transcript=-368bp_to_ENST00000504615_5end | |||
|cluster_id=chr19:35490828..35490858,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_10_at_GRAMD1A_5end | |||
|id=chr19:35490828..35490858,+ | |||
|ontology_enrichment_celltype=CL:0000860!4.75e-16!45;CL:0002057!4.40e-15!42;CL:0000557!1.15e-12!71;CL:0002009!1.42e-11!65;CL:0000839!1.02e-10!70;CL:0000766!3.51e-10!76;CL:0002194!6.32e-10!63;CL:0000576!6.32e-10!63;CL:0000040!6.32e-10!63;CL:0000559!6.32e-10!63;CL:0000738!5.52e-09!140;CL:0000763!9.41e-09!112;CL:0000049!9.41e-09!112;CL:0000453!1.92e-08!5;CL:0002031!1.98e-07!124;CL:0000988!8.16e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.03e-29;33!CL:0002057;3.03e-29;33!CL:0000473;4.48e-21;39!CL:0000234;4.48e-21;39!CL:0001014;3.43e-19;2!CL:0001016;3.43e-19;2!CL:0000576;8.90e-15;48!CL:0000766;8.61e-10;69!CL:0000453;3.16e-08;5!CL:0000840;5.41e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.21e-29,42;CL:0002057,2.21e-29,42;CL:0002009,1.50e-26,61;CL:0000473,1.78e-25,48;CL:0000234,1.78e-25,48;CL:0000557,5.21e-24,67;CL:0002194,5.30e-20,59;CL:0000576,5.30e-20,59;CL:0000040,5.30e-20,59;CL:0000559,5.30e-20,59;CL:0001014,3.13e-19,2;CL:0001016,3.13e-19,2;CL:0000839,1.03e-17,66;CL:0000766,4.25e-16,72;CL:0000763,4.12e-14,108;CL:0000049,4.12e-14,108;CL:0002031,1.76e-12,120;CL:0000738,9.53e-11,136;CL:0002087,2.09e-09,115;CL:0000988,4.66e-09,177;CL:0002032,1.01e-08,161;CL:0000837,1.01e-08,161;CL:0000037,2.90e-08,168;CL:0000453,3.05e-08,5;CL:0000840,5.26e-07,5;CL:0001029,5.26e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;9.23e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.36e-12!102;UBERON:0003061!3.36e-12!102;UBERON:0001474!1.86e-11!86;UBERON:0002371!4.07e-11!80;UBERON:0002193!6.12e-11!112;UBERON:0004765!4.74e-09!101;UBERON:0001434!4.74e-09!101;UBERON:0002405!6.63e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.15e-21,76;UBERON:0001474,2.94e-19,82;UBERON:0002390,2.67e-18,98;UBERON:0003061,2.67e-18,98;UBERON:0004765,2.31e-17,90;UBERON:0002405,9.81e-17,93;UBERON:0002193,2.16e-16,108;UBERON:0001434,2.05e-15,100;UBERON:0003081,1.42e-11,203;UBERON:0002204,3.17e-11,167 | |||
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| ||
|short_description=p10@GRAMD1A | |||
}} | }} |
Latest revision as of 09:10, 17 September 2015
Short description: | p10@GRAMD1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_GRAMD1A_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -368bp_to_ENST00000504615_5end |
EntrezGene: | GRAMD1A |
HGNC: | 29305 |
UniProt: | Q96CP6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.21e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.21e-29 | 42 |
macrophage dendritic cell progenitor | 1.50e-26 | 61 |
defensive cell | 1.78e-25 | 48 |
phagocyte | 1.78e-25 | 48 |
granulocyte monocyte progenitor cell | 5.21e-24 | 67 |
monopoietic cell | 5.30e-20 | 59 |
monocyte | 5.30e-20 | 59 |
monoblast | 5.30e-20 | 59 |
promonocyte | 5.30e-20 | 59 |
CD1a-positive Langerhans cell | 3.13e-19 | 2 |
immature CD1a-positive Langerhans cell | 3.13e-19 | 2 |
myeloid lineage restricted progenitor cell | 1.03e-17 | 66 |
myeloid leukocyte | 4.25e-16 | 72 |
myeloid cell | 4.12e-14 | 108 |
common myeloid progenitor | 4.12e-14 | 108 |
hematopoietic lineage restricted progenitor cell | 1.76e-12 | 120 |
leukocyte | 9.53e-11 | 136 |
nongranular leukocyte | 2.09e-09 | 115 |
hematopoietic cell | 4.66e-09 | 177 |
hematopoietic oligopotent progenitor cell | 1.01e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.01e-08 | 161 |
hematopoietic stem cell | 2.90e-08 | 168 |
Langerhans cell | 3.05e-08 | 5 |
immature conventional dendritic cell | 5.26e-07 | 5 |
common dendritic progenitor | 5.26e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.15e-21 | 76 |
bone element | 2.94e-19 | 82 |
hematopoietic system | 2.67e-18 | 98 |
blood island | 2.67e-18 | 98 |
skeletal element | 2.31e-17 | 90 |
immune system | 9.81e-17 | 93 |
hemolymphoid system | 2.16e-16 | 108 |
skeletal system | 2.05e-15 | 100 |
lateral plate mesoderm | 1.42e-11 | 203 |
musculoskeletal system | 3.17e-11 | 167 |