FFCP PHASE1:Hg19::chr6:25966448..25966461,+: Difference between revisions
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|id=chr6:25966448..25966461,+
|short_description=p7@TRIM38
|description=CAGE_peak_7_at_TRIM38_5end
|association_with_transcript=-282bp_to_ENST00000357085_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10475 | |EntrezGene=10475 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10059 | |HGNC=10059 | ||
|TSSclassifier=strong | |||
|UniProt=O00635 | |UniProt=O00635 | ||
|association_with_transcript=-282bp_to_ENST00000357085_5end | |||
|cluster_id=chr6:25966448..25966461,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_7_at_TRIM38_5end | |||
|id=chr6:25966448..25966461,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.90e-45!5;CL:0000540!1.74e-14!6;CL:0000031!1.74e-14!6;CL:0000404!1.74e-14!6;CL:0000039!1.45e-12!7;CL:0000586!1.45e-12!7;CL:0000047!5.30e-11!8;CL:0000148!9.20e-09!10;CL:0000541!9.20e-09!10 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.36e-23;7!CL:0000586;1.36e-23;7!CL:0002615;1.83e-14;3!CL:0002322;3.22e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.44e-23,7;CL:0000586,1.44e-23,7;CL:0002615,2.09e-14,3;CL:0002322,2.97e-09,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.21e-17;10!UBERON:0005564;7.21e-17;10 | |||
|ontology_enrichment_disease=DOID:3095!7.09e-07!22;DOID:2994!7.09e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.09e-08;22!DOID:2994;3.09e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.15e-08,22;DOID:2994,3.15e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.63e-11!8;UBERON:0003135!3.53e-08!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.54e-21;8!UBERON:0003135;1.95e-15;11!UBERON:0000991;1.39e-08;21!UBERON:0003101;3.09e-08;22!UBERON:0000079;3.09e-08;22!UBERON:0003688;6.78e-08;6!UBERON:0002358;6.78e-08;6!UBERON:0003684;6.78e-08;6!UBERON:0001178;6.78e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.98e-21,8;UBERON:0003135,2.02e-15,11;UBERON:0000991,1.42e-08,21;UBERON:0009196,1.42e-08,21;UBERON:0009117,1.42e-08,21;UBERON:0005564,1.42e-08,21;UBERON:0002323,1.55e-08,46;UBERON:0004176,3.15e-08,22;UBERON:0003101,3.15e-08,22;UBERON:0000079,3.15e-08,22;UBERON:0004458,4.65e-08,49;UBERON:0003688,7.25e-08,6;UBERON:0002358,7.25e-08,6;UBERON:0003684,7.25e-08,6;UBERON:0001178,7.25e-08,6;UBERON:0003886,2.22e-07,54 | |||
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|short_description=p7@TRIM38 | |||
}} | }} |
Latest revision as of 08:12, 17 September 2015
Short description: | p7@TRIM38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_TRIM38_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -282bp_to_ENST00000357085_5end |
EntrezGene: | TRIM38 |
HGNC: | 10059 |
UniProt: | O00635 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.44e-23 | 7 |
germ cell | 1.44e-23 | 7 |
adipocyte of omentum tissue | 2.09e-14 | 3 |
embryonic stem cell | 2.97e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
testis | 8.98e-21 | 8 |
male reproductive organ | 2.02e-15 | 11 |
gonad | 1.42e-08 | 21 |
indifferent external genitalia | 1.42e-08 | 21 |
indifferent gonad | 1.42e-08 | 21 |
gonad primordium | 1.42e-08 | 21 |
body cavity | 1.55e-08 | 46 |
external genitalia | 3.15e-08 | 22 |
male organism | 3.15e-08 | 22 |
male reproductive system | 3.15e-08 | 22 |
body cavity or lining | 4.65e-08 | 49 |
omentum | 7.25e-08 | 6 |
peritoneum | 7.25e-08 | 6 |
abdominal cavity | 7.25e-08 | 6 |
visceral peritoneum | 7.25e-08 | 6 |
body cavity precursor | 2.22e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.15e-08 | 22 |
germ cell cancer | 3.15e-08 | 22 |