FFCP PHASE1:Hg19::chr6:25279747..25279756,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55604 | |EntrezGene=55604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21581 | |HGNC=21581 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VZK9 | |UniProt=Q5VZK9 | ||
|association_with_transcript=91bp_to_ENST00000329474,ENST00000399313,NM_001173977,NM_017640_5end | |association_with_transcript=91bp_to_ENST00000329474,ENST00000399313,NM_001173977,NM_017640_5end | ||
|cluster_id=chr6:25279747..25279756,+ | |||
|description=CAGE_peak_9_at_LRRC16A_5end | |description=CAGE_peak_9_at_LRRC16A_5end | ||
|id=chr6:25279747..25279756,+ | |id=chr6:25279747..25279756,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002591;1.78e-29;1!CL:0002097;1.78e-15;2!CL:0000174;8.99e-11;3!CL:0002577;8.99e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,2.37e-29,1;CL:0002097,2.37e-15,2;CL:0002577,6.73e-11,3;CL:0000174,1.09e-10,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.39e-09!106 | |ontology_enrichment_disease=DOID:305!4.39e-09!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.58e-11!169;UBERON:0000925!2.58e-11!169;UBERON:0006595!2.58e-11!169;UBERON:0001007!7.41e-10!155;UBERON:0001555!7.41e-10!155;UBERON:0007026!7.41e-10!155;UBERON:0004921!5.73e-09!129;UBERON:0004185!5.73e-09!129;UBERON:0000077!2.66e-08!130;UBERON:0000481!2.36e-07!347;UBERON:0007023!2.36e-07!115;UBERON:0000064!3.27e-07!219;UBERON:0000062!4.70e-07!511 | |ontology_enrichment_uberon=UBERON:0004119!2.58e-11!169;UBERON:0000925!2.58e-11!169;UBERON:0006595!2.58e-11!169;UBERON:0001007!7.41e-10!155;UBERON:0001555!7.41e-10!155;UBERON:0007026!7.41e-10!155;UBERON:0004921!5.73e-09!129;UBERON:0004185!5.73e-09!129;UBERON:0000077!2.66e-08!130;UBERON:0000481!2.36e-07!347;UBERON:0007023!2.36e-07!115;UBERON:0000064!3.27e-07!219;UBERON:0000062!4.70e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.78e-15;2!UBERON:0002757;1.78e-15;2!UBERON:0010134;1.78e-15;2!UBERON:0000078;1.78e-15;2!UBERON:0005408;1.78e-15;2!UBERON:0002012;1.78e-15;2!UBERON:0001899;1.78e-15;2!UBERON:0008886;1.78e-15;2!UBERON:0002369;8.99e-11;3!UBERON:0001235;8.99e-11;3!UBERON:0006858;8.99e-11;3!UBERON:0001987;2.11e-08;4!UBERON:0003296;2.11e-08;4!UBERON:0010133;2.11e-08;4!UBERON:0002784;2.11e-08;4!UBERON:0002108;5.70e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,2.05e-15,2;UBERON:0007497,2.05e-15,2;UBERON:0003643,2.05e-15,2;UBERON:0003504,2.05e-15,2;UBERON:0003469,2.05e-15,2;UBERON:0003496,2.05e-15,2;UBERON:0002012,2.05e-15,2;UBERON:0008886,2.05e-15,2;UBERON:0007303,2.05e-15,2;UBERON:0002061,2.05e-15,2;UBERON:0005432,2.05e-15,2;UBERON:0004363,2.05e-15,2;UBERON:0001905,2.74e-15,2;UBERON:0002757,2.74e-15,2;UBERON:0010134,2.74e-15,2;UBERON:0005408,2.74e-15,2;UBERON:0001899,2.74e-15,2;UBERON:0004145,9.90e-11,3;UBERON:0002369,1.09e-10,3;UBERON:0001235,1.09e-10,3;UBERON:0006858,1.09e-10,3;UBERON:0001987,1.70e-08,4;UBERON:0004340,1.70e-08,4;UBERON:0003296,2.61e-08,4;UBERON:0010133,2.61e-08,4;UBERON:0002784,2.61e-08,4;UBERON:0002108,5.08e-07,4;UBERON:0003498,6.04e-07,5;UBERON:0005985,6.04e-07,5 | |||
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| ||
|short_description=p9@LRRC16A | |short_description=p9@LRRC16A | ||
}} | }} |
Latest revision as of 07:39, 17 September 2015
Short description: | p9@LRRC16A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LRRC16A_5end |
Coexpression cluster: | NA |
Association with transcript: | 91bp_to_ENST00000329474, ENST00000399313, NM_001173977, NM_017640_5end |
EntrezGene: | LRRC16A |
HGNC: | 21581 |
UniProt: | Q5VZK9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 2.37e-29 | 1 |
cortical cell of adrenal gland | 2.37e-15 | 2 |
placental epithelial cell | 6.73e-11 | 3 |
steroid hormone secreting cell | 1.09e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 2.05e-15 | 2 |
developing epithelial placode | 2.05e-15 | 2 |
respiratory system arterial blood vessel | 2.05e-15 | 2 |
respiratory system blood vessel | 2.05e-15 | 2 |
respiratory system artery | 2.05e-15 | 2 |
head blood vessel | 2.05e-15 | 2 |
pulmonary artery | 2.05e-15 | 2 |
pulmonary vascular system | 2.05e-15 | 2 |
pharyngeal vasculature | 2.05e-15 | 2 |
truncus arteriosus | 2.05e-15 | 2 |
aortic sac | 2.05e-15 | 2 |
pharyngeal arch artery | 2.05e-15 | 2 |
pineal body | 2.74e-15 | 2 |
regional part of epithalamus | 2.74e-15 | 2 |
secretory circumventricular organ | 2.74e-15 | 2 |
circumventricular organ | 2.74e-15 | 2 |
epithalamus | 2.74e-15 | 2 |
outflow tract | 9.90e-11 | 3 |
adrenal gland | 1.09e-10 | 3 |
adrenal cortex | 1.09e-10 | 3 |
adrenal/interrenal gland | 1.09e-10 | 3 |
placenta | 1.70e-08 | 4 |
allantois | 1.70e-08 | 4 |
gland of diencephalon | 2.61e-08 | 4 |
neuroendocrine gland | 2.61e-08 | 4 |
regional part of diencephalon | 2.61e-08 | 4 |
small intestine | 5.08e-07 | 4 |
heart blood vessel | 6.04e-07 | 5 |
coronary vessel | 6.04e-07 | 5 |