FFCP PHASE1:Hg19::chr5:176858693..176858730,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:176858693..176858730,+ to FFCP PHASE1:Hg19::chr5:176858693..176858730,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2870 | |EntrezGene=2870 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4545 | |HGNC=4545 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000515666,uc003mgs.1_5end | |||
|cluster_id=chr5:176858693..176858730,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_GRK6_5end | |||
|id=chr5:176858693..176858730,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.47e-52!140;CL:0002087!2.50e-49!119;CL:0000037!7.77e-44!172;CL:0000566!7.77e-44!172;CL:0002031!9.61e-42!124;CL:0002032!1.43e-41!165;CL:0000837!1.43e-41!165;CL:0000838!6.90e-41!52;CL:0000542!8.34e-40!53;CL:0000051!8.34e-40!53;CL:0000988!9.01e-40!182;CL:0000084!5.31e-24!25;CL:0000827!5.31e-24!25;CL:0000791!1.75e-22!18;CL:0000789!1.75e-22!18;CL:0002420!1.75e-22!18;CL:0002419!1.75e-22!18;CL:0000790!1.75e-22!18;CL:0002057!2.55e-18!42;CL:0000860!1.81e-16!45;CL:0000766!5.68e-16!76;CL:0000945!3.61e-15!24;CL:0000826!3.61e-15!24;CL:0000625!1.50e-14!11;CL:0000236!2.24e-14!14;CL:0000094!1.17e-11!8;CL:0002194!2.20e-11!63;CL:0000576!2.20e-11!63;CL:0000040!2.20e-11!63;CL:0000559!2.20e-11!63;CL:0000763!8.16e-11!112;CL:0000049!8.16e-11!112;CL:0002009!9.24e-11!65;CL:0000839!2.26e-09!70;CL:0000557!4.03e-09!71;CL:0000624!1.44e-08!6;CL:0002393!5.86e-08!9;CL:0002397!5.86e-08!9;CL:0000081!6.89e-08!11;CL:0000134!2.74e-07!358;CL:0002320!9.53e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.39e-36;18!CL:0000789;3.39e-36;18!CL:0002419;3.39e-36;18!CL:0000084;1.05e-30;25!CL:0000542;5.48e-26;53!CL:0000625;3.85e-23;11!CL:0000236;8.90e-19;13!CL:0000094;3.10e-18;8!CL:0000624;5.17e-13;6!CL:0000081;8.27e-13;11!CL:0000945;1.50e-12;24!CL:0002087;1.33e-11;104!CL:0000738;4.39e-09;136!CL:0000775;8.83e-09;3!CL:0000898;1.18e-07;3!CL:0000875;3.70e-07;3!CL:0002396;3.70e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.58e-45,52;CL:0000542,4.08e-44,53;CL:0000051,4.08e-44,53;CL:0000738,2.41e-40,136;CL:0000791,2.22e-36,18;CL:0000789,2.22e-36,18;CL:0002420,2.22e-36,18;CL:0002419,2.22e-36,18;CL:0000790,2.22e-36,18;CL:0002087,5.63e-33,115;CL:0000084,7.65e-31,25;CL:0000827,7.65e-31,25;CL:0000037,1.10e-29,168;CL:0000988,2.17e-27,177;CL:0002031,1.11e-26,120;CL:0002032,1.84e-26,161;CL:0000837,1.84e-26,161;CL:0000625,3.80e-23,11;CL:0000094,2.49e-18,8;CL:0000236,3.63e-17,14;CL:0000624,3.35e-13,6;CL:0000081,7.08e-13,11;CL:0000945,1.76e-12,24;CL:0000826,1.76e-12,24;CL:0000775,8.86e-09,3;CL:0002393,9.44e-08,9;CL:0002397,9.44e-08,9;CL:0000898,1.09e-07,3;CL:0000875,3.79e-07,3;CL:0002396,3.79e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.39e-36;18!CL:0000051;5.48e-26;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.46e-18!102;UBERON:0003061!1.46e-18!102;UBERON:0002193!2.38e-17!112;UBERON:0000178!4.11e-12!15;UBERON:0000179!4.11e-12!15;UBERON:0000463!4.11e-12!15;UBERON:0002405!5.82e-08!115;UBERON:0002371!9.62e-08!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.87e-20;15!UBERON:0000179;6.87e-20;15!UBERON:0000463;6.87e-20;15!UBERON:0002390;3.11e-11;32!UBERON:0002193;3.96e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.71e-20,15;UBERON:0000179,5.71e-20,15;UBERON:0000463,5.71e-20,15;UBERON:0002390,1.45e-09,98;UBERON:0003061,1.45e-09,98;UBERON:0002193,7.00e-09,108;UBERON:0004177,2.51e-07,7;UBERON:0005057,2.51e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22261449196722,0.903106483949403,1.49550484495991,1.18009283054671,1.91914699048606,1.85779347979291,0,0,0,0,0,0,0,0.401088894940283,1.08505435357926,0.671746422719773,0,0,1.30858414901608,0,0.242584061187816,0.232429036905685,0.411167888021826,0.619412741790207,0.28769239232215,0.256160706529101,0.236482229888585,0.689491361473237,0.645484683583826,0,1.31769637679823,0.545812300115692,0.898893937780338,0.306083892370903,0.641858054152187,3.19668562899521,0,0.797854630486527,0,0,0,0,0.75374599577023,0.521482918420201,0.434377689410233,0,0.736555271975129,1.58231193720442,1.26753171787165,0.212604299965044,1.88692780957538,1.01095768031846,0,0,4.56020389985998,2.58591680358817,2.37463399894024,8.79981222306614,4.91524750135918,5.33705552318133,5.54749289336459,9.6095036888643,6.32227683949932,5.94940385506376,7.63243003628291,1.1384259382189,1.17447437874188,1.91136614062614,0,0,0,3.14735632182133,1.96505381374582,4.93443597598822,12.0374276681288,4.56291173287027,6.15482147455153,9.74133642039557,11.9209188867136,6.77593587192126,6.86755073209225,5.41607727530031,13.8338625303729,8.19373889627233,9.04408475320219,5.52700035571697,9.27369874352168,6.67289534229272,8.02622484269139,7.31748666634838,16.203236005752,7.66440987203842,12.7142154828573,8.8556892206826,6.68987370080603,11.0684187155591,4.75226022224187,6.17357988218868,6.65530378002976,6.24653632761729,9.70786733380469,9.03240796613151,1.20964045934839,1.60464117470104,1.88271725047639,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0.174129737299267,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.9451043590158,27.1446184903828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7658523976586,0,0,0,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,1.37921532141349,1.94064817373566,1.15508732651774,0,0,0,0,0,44.1914144128838,35.899375104483,45.5857064779639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.94142780736755,1.38745825144478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.6712950123399,8.41100927856613,10.8232965563091,7.14695326373367,6.58179636937911,8.43015304550532,5.94034580961926,7.9312517629427,0,0,0,0,0.721346064882224,0.426851060090485,2.39139409093234,0,0,0.846694330895531,0,0,0,0.783399478865116,0,0.338583555603207,0.1605880751037,0,0,0,0,0.223676107892416,0,0.19538809540204,0,0,0,0,0,0,0,0,0.780103689942349,0,0,0,0,0,0,0,0.16480387422676,0,0,1.38141957765574,0,0,0,0,0,0,0,0,9.57932369387759,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0.476809736941136,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,1.32506888912221,0,0,0,0,0.213574825135389,0.314408610199332,0.414239055347196,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0.548257766857182,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0.576169937778896,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.218559560503957,0,0,0,0,0,0,0,1.31577485171795,1.93373663920732,0,0,0,0,0,0.917458566809082,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,1.48554492622814,0.869046000142011,0,0.12729431655633,0,0,0,3.63701086278773,0.215166616178029,0,0,0,0,0,0,0.244482888365733,0,0,3.8242020782295,0.641136984606466 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|short_description=p3@GRK6 | |||
}} | }} |
Latest revision as of 06:21, 17 September 2015
Short description: | p3@GRK6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GRK6_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000515666, uc003mgs.1_5end |
EntrezGene: | GRK6 |
HGNC: | 4545 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.58e-45 | 52 |
lymphocyte | 4.08e-44 | 53 |
common lymphoid progenitor | 4.08e-44 | 53 |
leukocyte | 2.41e-40 | 136 |
mature alpha-beta T cell | 2.22e-36 | 18 |
alpha-beta T cell | 2.22e-36 | 18 |
immature T cell | 2.22e-36 | 18 |
mature T cell | 2.22e-36 | 18 |
immature alpha-beta T cell | 2.22e-36 | 18 |
nongranular leukocyte | 5.63e-33 | 115 |
T cell | 7.65e-31 | 25 |
pro-T cell | 7.65e-31 | 25 |
hematopoietic stem cell | 1.10e-29 | 168 |
hematopoietic cell | 2.17e-27 | 177 |
hematopoietic lineage restricted progenitor cell | 1.11e-26 | 120 |
hematopoietic oligopotent progenitor cell | 1.84e-26 | 161 |
hematopoietic multipotent progenitor cell | 1.84e-26 | 161 |
CD8-positive, alpha-beta T cell | 3.80e-23 | 11 |
granulocyte | 2.49e-18 | 8 |
B cell | 3.63e-17 | 14 |
CD4-positive, alpha-beta T cell | 3.35e-13 | 6 |
blood cell | 7.08e-13 | 11 |
lymphocyte of B lineage | 1.76e-12 | 24 |
pro-B cell | 1.76e-12 | 24 |
neutrophil | 8.86e-09 | 3 |
intermediate monocyte | 9.44e-08 | 9 |
CD14-positive, CD16-positive monocyte | 9.44e-08 | 9 |
naive T cell | 1.09e-07 | 3 |
non-classical monocyte | 3.79e-07 | 3 |
CD14-low, CD16-positive monocyte | 3.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.71e-20 | 15 |
haemolymphatic fluid | 5.71e-20 | 15 |
organism substance | 5.71e-20 | 15 |
hematopoietic system | 1.45e-09 | 98 |
blood island | 1.45e-09 | 98 |
hemolymphoid system | 7.00e-09 | 108 |
hemopoietic organ | 2.51e-07 | 7 |
immune organ | 2.51e-07 | 7 |