FFCP PHASE1:Hg19::chr15:33025032..33025060,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26585 | |EntrezGene=26585 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |HGNC=2001 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=285bp_to_AL359059_5end | |association_with_transcript=285bp_to_AL359059_5end | ||
|cluster_id=chr15:33025032..33025060,+ | |||
|coexpression_cluster_id=C316 | |coexpression_cluster_id=C316 | ||
|description=CAGE_peak_8_at_GREM1_5end | |description=CAGE_peak_8_at_GREM1_5end | ||
|id=chr15:33025032..33025060,+ | |id=chr15:33025032..33025060,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.05e-32!180;CL:0000057!1.00e-25!75;CL:0000048!6.88e-16!430;CL:0000723!4.40e-15!436;CL:0002620!1.31e-14!23;CL:0000680!1.57e-14!57;CL:0000056!1.57e-14!57;CL:0000355!1.57e-14!57;CL:0000034!4.73e-14!444;CL:0000192!8.93e-14!42;CL:0000514!8.93e-14!42;CL:0002334!9.65e-13!12;CL:0000187!1.46e-12!54;CL:0000359!2.25e-11!32;CL:0000393!6.09e-11!60;CL:0000211!6.09e-11!60;CL:0000183!1.35e-10!59;CL:0002371!3.30e-08!591;CL:0002320!1.75e-07!365;CL:0000134!7.80e-07!358 | |ontology_enrichment_celltype=CL:0000055!1.05e-32!180;CL:0000057!1.00e-25!75;CL:0000048!6.88e-16!430;CL:0000723!4.40e-15!436;CL:0002620!1.31e-14!23;CL:0000680!1.57e-14!57;CL:0000056!1.57e-14!57;CL:0000355!1.57e-14!57;CL:0000034!4.73e-14!444;CL:0000192!8.93e-14!42;CL:0000514!8.93e-14!42;CL:0002334!9.65e-13!12;CL:0000187!1.46e-12!54;CL:0000359!2.25e-11!32;CL:0000393!6.09e-11!60;CL:0000211!6.09e-11!60;CL:0000183!1.35e-10!59;CL:0002371!3.30e-08!591;CL:0002320!1.75e-07!365;CL:0000134!7.80e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0002334;7.99e-19;12!CL:0002620;2.29e-16;23!CL:0002559;2.40e-09;5!CL:0000057;2.31e-08;73!CL:0000135;1.23e-07;3!CL:0000388;1.23e-07;3!CL:0002579;1.30e-07;3!CL:0000056;1.44e-07;4!CL:0002539;3.68e-07;10!CL:0002320;3.79e-07;188!CL:0002580;6.15e-07;3!CL:0000136;8.63e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.13e-28,76;CL:0002334,7.41e-19,12;CL:0002620,2.17e-16,23;CL:0000048,2.16e-14,427;CL:0000723,6.77e-14,433;CL:0000034,2.94e-13,441;CL:0002320,7.26e-10,361;CL:0000134,7.49e-10,354;CL:0002559,2.36e-09,5;CL:0000136,2.42e-09,15;CL:0000219,4.49e-08,386;CL:0000135,1.20e-07,3;CL:0000388,1.20e-07,3;CL:0002579,1.28e-07,3;CL:0000515,1.50e-07,4;CL:0002539,3.91e-07,10;CL:0002580,6.89e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000515;1.44e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!1.52e-08!14;DOID:17!8.76e-07!5;DOID:450!8.76e-07!5;DOID:66!8.76e-07!5;DOID:423!8.76e-07!5;DOID:0080000!8.76e-07!5;DOID:11722!8.76e-07!5 | |ontology_enrichment_disease=DOID:2394!1.52e-08!14;DOID:17!8.76e-07!5;DOID:450!8.76e-07!5;DOID:66!8.76e-07!5;DOID:423!8.76e-07!5;DOID:0080000!8.76e-07!5;DOID:11722!8.76e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:17;4.12e-11;5!DOID:450;4.12e-11;5!DOID:66;4.12e-11;5!DOID:423;4.12e-11;5!DOID:0080000;4.12e-11;5!DOID:11722;4.12e-11;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.22e-11,5;DOID:450,4.22e-11,5;DOID:66,4.22e-11,5;DOID:423,4.22e-11,5;DOID:0080000,4.22e-11,5;DOID:11722,4.22e-11,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.40e-19!83;UBERON:0002329!2.40e-19!83;UBERON:0003077!2.40e-19!83;UBERON:0003059!2.40e-19!83;UBERON:0007282!2.40e-19!83;UBERON:0009618!2.40e-19!83;UBERON:0007285!2.40e-19!83;UBERON:0004290!9.44e-16!70;UBERON:0000486!9.15e-14!82;UBERON:0002199!1.20e-13!45;UBERON:0002416!1.20e-13!45;UBERON:0005256!5.50e-13!143;UBERON:0001134!8.65e-13!61;UBERON:0002036!8.65e-13!61;UBERON:0003082!8.65e-13!61;UBERON:0002385!1.06e-12!63;UBERON:0001015!1.06e-12!63;UBERON:0000383!1.06e-12!63;UBERON:0002097!1.31e-12!40;UBERON:0003102!2.95e-11!95;UBERON:0002100!6.22e-10!216;UBERON:0000475!2.96e-09!365;UBERON:0001637!4.61e-08!42;UBERON:0003509!4.61e-08!42;UBERON:0004572!4.61e-08!42;UBERON:0004573!4.78e-08!33;UBERON:0004571!4.78e-08!33;UBERON:0002384!9.94e-08!375;UBERON:0003688!1.82e-07!6;UBERON:0002358!1.82e-07!6;UBERON:0003684!1.82e-07!6;UBERON:0001178!1.82e-07!6 | |ontology_enrichment_uberon=UBERON:0000914!2.40e-19!83;UBERON:0002329!2.40e-19!83;UBERON:0003077!2.40e-19!83;UBERON:0003059!2.40e-19!83;UBERON:0007282!2.40e-19!83;UBERON:0009618!2.40e-19!83;UBERON:0007285!2.40e-19!83;UBERON:0004290!9.44e-16!70;UBERON:0000486!9.15e-14!82;UBERON:0002199!1.20e-13!45;UBERON:0002416!1.20e-13!45;UBERON:0005256!5.50e-13!143;UBERON:0001134!8.65e-13!61;UBERON:0002036!8.65e-13!61;UBERON:0003082!8.65e-13!61;UBERON:0002385!1.06e-12!63;UBERON:0001015!1.06e-12!63;UBERON:0000383!1.06e-12!63;UBERON:0002097!1.31e-12!40;UBERON:0003102!2.95e-11!95;UBERON:0002100!6.22e-10!216;UBERON:0000475!2.96e-09!365;UBERON:0001637!4.61e-08!42;UBERON:0003509!4.61e-08!42;UBERON:0004572!4.61e-08!42;UBERON:0004573!4.78e-08!33;UBERON:0004571!4.78e-08!33;UBERON:0002384!9.94e-08!375;UBERON:0003688!1.82e-07!6;UBERON:0002358!1.82e-07!6;UBERON:0003684!1.82e-07!6;UBERON:0001178!1.82e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;9.04e-13;41!UBERON:0003688;1.96e-12;6!UBERON:0002358;1.96e-12;6!UBERON:0003684;1.96e-12;6!UBERON:0001178;1.96e-12;6!UBERON:0002199;7.71e-12;46!UBERON:0002416;7.71e-12;46!UBERON:0004457;2.01e-10;9!UBERON:0000042;2.01e-10;9!UBERON:0003102;8.11e-10;50!UBERON:0002073;2.40e-09;5!UBERON:0002384;8.66e-08;198!UBERON:0007846;1.23e-07;3!UBERON:0000043;1.23e-07;3!UBERON:0007845;1.23e-07;3!UBERON:0004237;3.68e-07;10!UBERON:0004695;3.68e-07;10!UBERON:0002111;3.68e-07;10!UBERON:0004178;3.68e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.07e-18,46;UBERON:0002416,2.07e-18,46;UBERON:0002097,5.13e-16,41;UBERON:0003102,1.00e-12,99;UBERON:0003688,2.43e-12,6;UBERON:0002358,2.43e-12,6;UBERON:0003684,2.43e-12,6;UBERON:0001178,2.43e-12,6;UBERON:0002384,2.67e-10,371;UBERON:0002073,2.36e-09,5;UBERON:0005086,2.36e-09,5;UBERON:0007846,1.20e-07,3;UBERON:0000043,1.20e-07,3;UBERON:0007845,1.20e-07,3;UBERON:0004457,1.70e-07,12;UBERON:0000042,1.70e-07,12;UBERON:0004237,3.91e-07,10;UBERON:0004695,3.91e-07,10;UBERON:0002111,3.91e-07,10;UBERON:0004178,3.91e-07,10;UBERON:0007524,7.31e-07,73 | |||
|phase1_expression=3.99692434395225,10.0627246228762,2.53717927372748,2.00146596706261,4.02264984984559,6.10636966870258,2.53299878168311,0,0,0,0,0,0,0.247532705920093,1.98838425436749,14.1188280754873,3.01347264011988,5.11217063271161,7.3189919818576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,3.50936537445123,0.434539556882471,0.795285947051099,2.91980922181582,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9212707440783,0.506522046658319,1.19168262731897,2.86836620748814,1.77334191099179,0.560677600142307,0,0.49333509683432,0.311211035399766,0.134710672069688,0,0,0,0,1.24864030732128,0.570471821544449,0,0,0.161872944368132,0.140450806702248,0,0.491337269247072,0.103325781175765,4.75201142912821,13.1051472517635,0,0,0.168336113954066,0.250237039743928,0,3.5118209670467,8.27517048657353,4.20666564938471,0.226864366320042,6.99619579186562,5.55249210928275,9.96079935449941,5.40163972951924,4.225153698776,1.54584324027377,3.7223371266318,2.36286865137773,4.28722822709274,2.77677151668526,4.51044503347267,0.484938170456436,4.61512470271599,4.03008392910561,4.23901480776219,0,0,0,0,0,0,0,0,0,1.56449532329816,18.6539872075937,1.38134921352481,2.3218396401599,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0.845302752556,5.58470044828228,4.16029747645464,0,0,0,0.857867961948885,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0.239624855491583,0,1.42636905040718,2.02693829334611,1.84928690295345,3.04403637507822,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,0.500170521059677,0,2.70362119990049,14.4527480925701,8.51593041183247,3.86566669475954,0,0,1.03473071292505,0,0.553107505625109,1.47702144595741,0,0,0,0,0,0,0,0,6.4508030032882,1.38115775959256,10.6650835884568,5.76626171650654,7.16390148693385,15.4419764297863,5.93672265779964,2.31314540703983,2.30830242907065,0.821271560138091,3.63478100428535,1.74315567689939,0,0,0,0.459257792658427,1.63882051206045,1.83574180943194,0,0.0770153371044148,0,0,0.211103257785751,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,14.4615536859744,0.193341436584244,0,0,0,0.214840489736547,0,0.170453254832202,0.267096106940212,0,0,0,0,2.32422774648643,4.7221852024596,0,0,0,0,0.74129687641568,0.143124886741991,0.744316738719335,1.2655176988749,0.571890581771475,0,0.42793898803392,0.318203247925937,1.56989728039846,1.43897966066652,0.54907405947211,0.942499218765491,0.202182481573316,0,0.842516912477962,0,0.974853958525138,2.11300293513511,0.545999645631943,1.1312434556297,0,0.551365343546124,0,0.438450885253763,0.578775534266688,0.655894752046633,1.21746226177622,0.30982349809975,0,0.143411352204052,0.0982490410131212,3.5667105148125,0,0.844430541190656,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779160935160341,0,0,0.19924798825107,0.276283915531148,0,0,0,10.8863855681633,0,0,0,0.295930216910801,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0.19871461170299,0,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0.223171457441873,0,18.0149941771202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08599920350743,0,0.326587360109409,0,0,0.851940108927109,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854183854313742,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.701139929541673,0.554805861502613,0.568209015825267,0.251567901752575,1.77962244319307,0.457680136793847,0.302461847526478,0.466311601748341,2.80924784980304,0.63718706865481,2.24901556081802,0.465788870628778,2.07353103920428,7.70940972218185,2.08698024724694,0.300515217994437,0,0.813741466409323,4.72806513926655,0.107410557042488,6.49647263829891,5.17524655308201,3.60024988196838,2.40376993627955,4.04099386519103,0,0,0,0.782982875895635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,4.77006525980128,0,0,8.11154670488573,1.2249819094128,0,0,0,0,0.252071696221718,0,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,5.61197955311177,0,0,0,0,0,0.0852134047591577,0.846774100381858,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,11.2151895693959,0,0,0,0,0,0,0,0,0.2866791663029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| ||
|short_description=p8@GREM1 | |short_description=p8@GREM1 | ||
}} | }} |
Latest revision as of 04:57, 17 September 2015
Short description: | p8@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 285bp_to_AL359059_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.13e-28 | 76 |
preadipocyte | 7.41e-19 | 12 |
skin fibroblast | 2.17e-16 | 23 |
multi fate stem cell | 2.16e-14 | 427 |
somatic stem cell | 6.77e-14 | 433 |
stem cell | 2.94e-13 | 441 |
connective tissue cell | 7.26e-10 | 361 |
mesenchymal cell | 7.49e-10 | 354 |
hair follicle cell | 2.36e-09 | 5 |
fat cell | 2.42e-09 | 15 |
motile cell | 4.49e-08 | 386 |
fibrocyte | 1.20e-07 | 3 |
tendon cell | 1.20e-07 | 3 |
omentum preadipocyte | 1.28e-07 | 3 |
skeletal muscle myoblast | 1.50e-07 | 4 |
aortic smooth muscle cell | 3.91e-07 | 10 |
preadipocyte of the breast | 6.89e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
integument | 2.07e-18 | 46 |
integumental system | 2.07e-18 | 46 |
skin of body | 5.13e-16 | 41 |
surface structure | 1.00e-12 | 99 |
omentum | 2.43e-12 | 6 |
peritoneum | 2.43e-12 | 6 |
abdominal cavity | 2.43e-12 | 6 |
visceral peritoneum | 2.43e-12 | 6 |
connective tissue | 2.67e-10 | 371 |
hair follicle | 2.36e-09 | 5 |
hair follicle placode | 2.36e-09 | 5 |
dense regular connective tissue | 1.20e-07 | 3 |
tendon | 1.20e-07 | 3 |
regular connective tissue | 1.20e-07 | 3 |
cavity lining | 1.70e-07 | 12 |
serous membrane | 1.70e-07 | 12 |
blood vessel smooth muscle | 3.91e-07 | 10 |
arterial system smooth muscle | 3.91e-07 | 10 |
artery smooth muscle tissue | 3.91e-07 | 10 |
aorta smooth muscle tissue | 3.91e-07 | 10 |
dense mesenchyme tissue | 7.31e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.22e-11 | 5 |
myotonic disease | 4.22e-11 | 5 |
muscle tissue disease | 4.22e-11 | 5 |
myopathy | 4.22e-11 | 5 |
muscular disease | 4.22e-11 | 5 |
myotonic dystrophy | 4.22e-11 | 5 |