FFCP PHASE1:Hg19::chr10:135051422..135051430,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27287 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13639 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=5bp_to_EU446701_5end | |||
|cluster_id=chr10:135051422..135051430,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_2_at_VENTX_5end | |||
|id=chr10:135051422..135051430,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.06e-46!5;CL:0000039!1.40e-21!7;CL:0000586!1.40e-21!7;CL:0000540!3.94e-14!6;CL:0000031!3.94e-14!6;CL:0000404!3.94e-14!6;CL:0000047!9.73e-11!8;CL:0000148!5.09e-09!10;CL:0000541!5.09e-09!10 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.01e-108;5!CL:0002321;1.35e-36;15!CL:0000039;4.23e-29;7!CL:0000586;4.23e-29;7!CL:0000148;1.85e-20;10!CL:0000147;7.88e-15;14!CL:0000710;1.38e-10;20!CL:0000075;5.31e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.05e-109,5;CL:0000039,3.50e-29,7;CL:0000586,3.50e-29,7;CL:0000148,1.57e-20,10;CL:0000541,1.57e-20,10;CL:0000147,7.00e-15,14;CL:0000710,1.27e-10,20;CL:0000075,5.00e-08,27 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.28e-20;10!UBERON:0005564;1.28e-20;10 | |||
|ontology_enrichment_disease=DOID:3095!1.31e-19!22;DOID:2994!1.31e-19!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.73e-16;22!DOID:2994;1.73e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.77e-16,22;DOID:2994,1.77e-16,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!6.43e-19!8;UBERON:0003135!8.01e-14!11;UBERON:0000991!7.30e-11!21;UBERON:0009196!7.30e-11!21;UBERON:0009117!7.30e-11!21;UBERON:0005564!7.30e-11!21;UBERON:0004176!2.31e-10!22;UBERON:0003101!5.52e-07!22;UBERON:0000079!5.52e-07!22;UBERON:0002323!9.98e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.44e-25;8!UBERON:0003135;8.15e-19;11!UBERON:0000922;1.04e-17;49!UBERON:0000991;3.46e-10;21!UBERON:0003101;9.40e-10;22!UBERON:0000079;9.40e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.22e-25,8;UBERON:0003135,7.22e-19,11;UBERON:0000991,3.25e-10,21;UBERON:0009196,3.25e-10,21;UBERON:0009117,3.25e-10,21;UBERON:0005564,3.25e-10,21;UBERON:0004176,8.86e-10,22;UBERON:0003101,8.86e-10,22;UBERON:0000079,8.86e-10,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21973706129595,1.45782745153634,1.85910308591229,1.55491582523056,2.01856680700503,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803765742325096,0.137539436597234,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.109265571963696,1.0135880080915,2.85568723277549,3.20660886318673,1.8378979906969,0.50141507858475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@VENTX | |||
}} |
Latest revision as of 04:51, 17 September 2015
Short description: | p2@VENTX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VENTX_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 5bp_to_EU446701_5end |
EntrezGene: | VENTX |
HGNC: | 13639 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.05e-109 | 5 |
germ line cell | 3.50e-29 | 7 |
germ cell | 3.50e-29 | 7 |
melanocyte | 1.57e-20 | 10 |
melanoblast | 1.57e-20 | 10 |
pigment cell | 7.00e-15 | 14 |
neurecto-epithelial cell | 1.27e-10 | 20 |
columnar/cuboidal epithelial cell | 5.00e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
testis | 1.22e-25 | 8 |
male reproductive organ | 7.22e-19 | 11 |
gonad | 3.25e-10 | 21 |
indifferent external genitalia | 3.25e-10 | 21 |
indifferent gonad | 3.25e-10 | 21 |
gonad primordium | 3.25e-10 | 21 |
external genitalia | 8.86e-10 | 22 |
male organism | 8.86e-10 | 22 |
male reproductive system | 8.86e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.77e-16 | 22 |
germ cell cancer | 1.77e-16 | 22 |