FFCP PHASE1:Hg19::chr10:135051353..135051367,+: Difference between revisions
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|id=chr10:135051353..135051367,+
|short_description=p1@VENTX
|description=CAGE_peak_1_at_VENTX_5end
|association_with_transcript=-40bp_to_NM_014468,uc010quy.1_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27287 | |EntrezGene=27287 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13639 | |HGNC=13639 | ||
|TSSclassifier=strong | |||
|UniProt=O95231 | |UniProt=O95231 | ||
|association_with_transcript=-40bp_to_NM_014468,uc010quy.1_5end | |||
|cluster_id=chr10:135051353..135051367,+ | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_1_at_VENTX_5end | |||
|id=chr10:135051353..135051367,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.32e-48!5;CL:0000039!9.05e-23!7;CL:0000586!9.05e-23!7;CL:0000148!2.72e-09!10;CL:0000541!2.72e-09!10;CL:0000540!2.96e-07!6;CL:0000031!2.96e-07!6;CL:0000404!2.96e-07!6;CL:0000147!9.05e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.12e-75;5!CL:0000039;1.01e-35;7!CL:0000586;1.01e-35;7!CL:0002321;2.09e-25;15!CL:0000148;2.18e-14;10!CL:0000147;1.87e-10;14!CL:0000710;1.75e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.04e-75,5;CL:0000039,9.70e-36,7;CL:0000586,9.70e-36,7;CL:0000148,2.23e-14,10;CL:0000541,2.23e-14,10;CL:0000147,1.90e-10,14;CL:0000710,1.77e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.78e-25;10!UBERON:0005564;3.78e-25;10 | |||
|ontology_enrichment_disease=DOID:3095!8.64e-21!22;DOID:2994!8.64e-21!22;DOID:8552!1.46e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.21e-17;22!DOID:2994;1.21e-17;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.21e-17,22;DOID:2994,1.21e-17,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.55e-30!8;UBERON:0003135!4.74e-22!11;UBERON:0000991!3.96e-16!21;UBERON:0009196!3.96e-16!21;UBERON:0009117!3.96e-16!21;UBERON:0005564!3.96e-16!21;UBERON:0004176!2.23e-15!22;UBERON:0003101!5.61e-11!22;UBERON:0000079!5.61e-11!22;UBERON:0002323!4.02e-07!46;UBERON:0003133!8.33e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.56e-31;8!UBERON:0003135;6.68e-23;11!UBERON:0000922;1.98e-15;49!UBERON:0000991;3.64e-12;21!UBERON:0003101;1.26e-11;22!UBERON:0000079;1.26e-11;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.46e-31,8;UBERON:0003135,6.49e-23,11;UBERON:0000991,3.59e-12,21;UBERON:0009196,3.59e-12,21;UBERON:0009117,3.59e-12,21;UBERON:0005564,3.59e-12,21;UBERON:0004176,1.24e-11,22;UBERON:0003101,1.24e-11,22;UBERON:0000079,1.24e-11,22 | |||
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|short_description=p1@VENTX | |||
}} | }} |
Latest revision as of 04:50, 17 September 2015
Short description: | p1@VENTX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VENTX_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | -40bp_to_NM_014468, uc010quy.1_5end |
EntrezGene: | VENTX |
HGNC: | 13639 |
UniProt: | O95231 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.04e-75 | 5 |
germ line cell | 9.70e-36 | 7 |
germ cell | 9.70e-36 | 7 |
melanocyte | 2.23e-14 | 10 |
melanoblast | 2.23e-14 | 10 |
pigment cell | 1.90e-10 | 14 |
neurecto-epithelial cell | 1.77e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
testis | 2.46e-31 | 8 |
male reproductive organ | 6.49e-23 | 11 |
gonad | 3.59e-12 | 21 |
indifferent external genitalia | 3.59e-12 | 21 |
indifferent gonad | 3.59e-12 | 21 |
gonad primordium | 3.59e-12 | 21 |
external genitalia | 1.24e-11 | 22 |
male organism | 1.24e-11 | 22 |
male reproductive system | 1.24e-11 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.21e-17 | 22 |
germ cell cancer | 1.21e-17 | 22 |