FFCP PHASE1:Hg19::chr15:33024106..33024122,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26585 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-15bp_to_AL359060_5end | |||
|cluster_id=chr15:33024106..33024122,+ | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_9_at_GREM1_5end | |||
|id=chr15:33024106..33024122,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.19e-26!180;CL:0000057!1.40e-24!75;CL:0000048!1.30e-16!430;CL:0000723!7.85e-16!436;CL:0002620!2.74e-15!23;CL:0000034!7.91e-15!444;CL:0002334!3.67e-14!12;CL:0002320!9.95e-11!365;CL:0000192!4.41e-10!42;CL:0000514!4.41e-10!42;CL:0002371!1.98e-09!591;CL:0000134!2.26e-09!358;CL:0000680!3.17e-09!57;CL:0000056!3.17e-09!57;CL:0000355!3.17e-09!57;CL:0000359!2.54e-08!32;CL:0000144!8.14e-08!625;CL:0000219!1.38e-07!390;CL:0000187!1.52e-07!54;CL:0000499!9.43e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.26e-21;12!CL:0002620;4.99e-17;23!CL:0002559;9.79e-11;5!CL:0000057;9.05e-10;73!CL:0000135;4.21e-08;3!CL:0000388;4.21e-08;3!CL:0002580;6.51e-08;3!CL:0002579;7.38e-08;3!CL:0002320;1.65e-07;188!CL:0000346;2.04e-07;3!CL:1000428;2.04e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.95e-30,76;CL:0002334,1.45e-21,12;CL:0002620,4.84e-17,23;CL:0000048,6.10e-15,427;CL:0000723,1.85e-14,433;CL:0000034,7.74e-14,441;CL:0002559,8.04e-11,5;CL:0002320,2.36e-10,361;CL:0000134,2.78e-10,354;CL:0000219,1.54e-08,386;CL:0000135,3.76e-08,3;CL:0000388,3.76e-08,3;CL:0002579,6.53e-08,3;CL:0002580,6.68e-08,3;CL:0000346,2.49e-07,3;CL:1000428,2.49e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!8.83e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:17;1.02e-10;5!DOID:450;1.02e-10;5!DOID:66;1.02e-10;5!DOID:423;1.02e-10;5!DOID:0080000;1.02e-10;5!DOID:11722;1.02e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.93e-11,5;DOID:450,9.93e-11,5;DOID:66,9.93e-11,5;DOID:423,9.93e-11,5;DOID:0080000,9.93e-11,5;DOID:11722,9.93e-11,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.08e-14!83;UBERON:0002329!6.08e-14!83;UBERON:0003077!6.08e-14!83;UBERON:0003059!6.08e-14!83;UBERON:0007282!6.08e-14!83;UBERON:0009618!6.08e-14!83;UBERON:0007285!6.08e-14!83;UBERON:0002199!9.31e-14!45;UBERON:0002416!9.31e-14!45;UBERON:0003102!3.68e-12!95;UBERON:0002097!1.38e-11!40;UBERON:0004290!5.35e-11!70;UBERON:0002384!1.24e-10!375;UBERON:0000486!6.50e-10!82;UBERON:0005256!7.99e-10!143;UBERON:0000475!9.27e-09!365;UBERON:0002385!4.14e-08!63;UBERON:0001015!4.14e-08!63;UBERON:0000383!4.14e-08!63;UBERON:0001134!4.61e-08!61;UBERON:0002036!4.61e-08!61;UBERON:0003082!4.61e-08!61;UBERON:0002100!6.29e-08!216;UBERON:0003688!1.16e-07!6;UBERON:0002358!1.16e-07!6;UBERON:0003684!1.16e-07!6;UBERON:0001178!1.16e-07!6;UBERON:0001135!1.94e-07!15;UBERON:0004457!9.98e-07!12;UBERON:0000042!9.98e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.02e-14;41!UBERON:0002199;9.56e-12;46!UBERON:0002416;9.56e-12;46!UBERON:0002073;9.79e-11;5!UBERON:0003102;1.26e-09;50!UBERON:0003688;1.57e-09;6!UBERON:0002358;1.57e-09;6!UBERON:0003684;1.57e-09;6!UBERON:0001178;1.57e-09;6!UBERON:0004457;1.96e-08;9!UBERON:0000042;1.96e-08;9!UBERON:0002384;2.48e-08;198!UBERON:0007846;4.21e-08;3!UBERON:0000043;4.21e-08;3!UBERON:0007845;4.21e-08;3!UBERON:0001135;5.29e-08;15!UBERON:0000412;2.04e-07;3!UBERON:0001992;2.04e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.00e-18,46;UBERON:0002416,2.00e-18,46;UBERON:0002097,2.18e-17,41;UBERON:0003102,2.45e-13,99;UBERON:0002384,7.68e-11,371;UBERON:0002073,8.04e-11,5;UBERON:0005086,8.04e-11,5;UBERON:0003688,1.72e-09,6;UBERON:0002358,1.72e-09,6;UBERON:0003684,1.72e-09,6;UBERON:0001178,1.72e-09,6;UBERON:0007846,3.76e-08,3;UBERON:0000043,3.76e-08,3;UBERON:0007845,3.76e-08,3;UBERON:0001135,4.81e-08,15;UBERON:0000412,2.49e-07,3;UBERON:0001992,2.49e-07,3;UBERON:0007524,4.26e-07,73 | |||
|phase1_expression=4.90531624030503,18.8408461024065,2.25527046553554,3.00219895059391,0.893922188854576,3.48935409640147,0,0.631719873426831,0.261185628199839,0,0,0,0,0.618831764800233,0.662794751455832,5.3786011716142,7.23233433628772,5.84248072309899,5.36726078669558,0,0,0,0,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.579386075843295,0,2.43317435151318,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,0.12663051166458,1.05927344650575,0.573673241497627,3.19201543978521,0,0,0.24666754841716,0,0,0,0,0,0,0.624320153660641,0,1.04614076386261,0.117434498643765,0.161872944368132,0,0.204154171254893,0.245668634623536,0.103325781175765,2.37600571456411,15.5778165445491,0,0,0.336672227908132,0.375355559615893,0,1.31693286264251,11.0335606487647,3.75595147266492,0,1.79389635688862,4.27114777637135,6.99375273826554,1.20036438433761,2.47326070172253,1.8034837803194,2.41951913231067,1.85653965465393,3.11798416515836,1.26216887122057,3.68199594569197,0.484938170456436,4.26011511019937,2.31729825923573,3.73033303083073,0,0,0,0,0,0,0,0,0,3.12899064659632,37.9512153533802,1.38134921352481,1.85747171212792,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0,0,0.36669142910475,0.387815147273333,0,1.690605505112,2.6593811658487,4.16029747645464,0,0,0,0.428933980974443,0,0,0.325736184293735,0.710783897485092,0,0,0.871533458600294,0,0,0,0,0.239624855491583,0,0,1.59259437334337,1.64381058040307,3.04403637507822,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.49076596687656,2.00068208423871,0.271265023699736,1.87173775377726,19.2703307900935,9.77754973210395,3.04567678981054,0.300946099727719,0,0,0,0.737476674166813,1.82455590382974,0,0,0,0,0,0,0,0,4.71404834855676,3.06923946576125,21.3301671769136,2.94720043288112,6.14048698880044,21.2327175909562,4.45254199334973,5.39733928309294,1.9531789784444,0.492762936082855,4.67328986265259,2.32420756919918,0,0,0,0.574072240823034,2.1850940160806,2.09799063935079,0,0,0,0,0.211103257785751,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0,0,0,1.6068392984416,0,0,0,0.413509717453592,0,0,0.255679882248303,0,0,0,0,0,0.929691098594572,1.88887408098384,0.6970372701606,0,0,0,0.37064843820784,0.143124886741991,1.116475108079,0.316379424718726,0.762520775695299,0,0.855877976067841,0.318203247925937,0,1.2591072030832,1.64722217841633,1.64937363283961,0,0,0.421258456238981,0,1.70599442741899,0,0.136499911407986,1.1312434556297,0,0,0,0,0.578775534266688,0,0.811641507850816,1.239293992399,0.563391205064483,0.286822704408103,0,2.1400263088875,0,1.68886108238131,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0.222617410045812,0,0,0,0,0,0,0,9.64222721751603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,11.8898961568993,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0.653174720218818,0,0,1.5334921960688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0.149254802886874,0.934853239388898,0,0.378806010550178,0,3.55924488638614,0.228840068396924,0.302461847526478,1.5543720058278,3.40066844976158,0.955780602982214,0.449803112163605,0.155262956876259,3.31764966272684,4.51930914748591,1.5652351854352,0.150257608997218,0.761610424337591,0.406870733204662,4.18251916165887,0.537052785212442,9.74470895744837,3.98095888698616,3.60024988196838,2.74716564146234,1.6837474438296,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0.982829546539238,0,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,2.22603045457393,0,0,4.23211132428821,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0.175871244359621,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60342272946051,0,0,0,0,0.236664001461131,0,0.423387050190929,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.392616934229891,0,0,6.28730324344923,0,0,0,0,0,0,0,0,0.286679166302903,0.473314686579554,0,0,0,25.6676562535058,3.69740502905135,10.8156640530947,0.378499274505237,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0 | |||
|short_description=p9@GREM1 | |||
}} |
Latest revision as of 04:48, 17 September 2015
Short description: | p9@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | -15bp_to_AL359060_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.95e-30 | 76 |
preadipocyte | 1.45e-21 | 12 |
skin fibroblast | 4.84e-17 | 23 |
multi fate stem cell | 6.10e-15 | 427 |
somatic stem cell | 1.85e-14 | 433 |
stem cell | 7.74e-14 | 441 |
hair follicle cell | 8.04e-11 | 5 |
connective tissue cell | 2.36e-10 | 361 |
mesenchymal cell | 2.78e-10 | 354 |
motile cell | 1.54e-08 | 386 |
fibrocyte | 3.76e-08 | 3 |
tendon cell | 3.76e-08 | 3 |
omentum preadipocyte | 6.53e-08 | 3 |
preadipocyte of the breast | 6.68e-08 | 3 |
hair follicle dermal papilla cell | 2.49e-07 | 3 |
stem cell of epidermis | 2.49e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
integument | 2.00e-18 | 46 |
integumental system | 2.00e-18 | 46 |
skin of body | 2.18e-17 | 41 |
surface structure | 2.45e-13 | 99 |
connective tissue | 7.68e-11 | 371 |
hair follicle | 8.04e-11 | 5 |
hair follicle placode | 8.04e-11 | 5 |
omentum | 1.72e-09 | 6 |
peritoneum | 1.72e-09 | 6 |
abdominal cavity | 1.72e-09 | 6 |
visceral peritoneum | 1.72e-09 | 6 |
dense regular connective tissue | 3.76e-08 | 3 |
tendon | 3.76e-08 | 3 |
regular connective tissue | 3.76e-08 | 3 |
smooth muscle tissue | 4.81e-08 | 15 |
dermal papilla | 2.49e-07 | 3 |
papillary layer of dermis | 2.49e-07 | 3 |
dense mesenchyme tissue | 4.26e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.93e-11 | 5 |
myotonic disease | 9.93e-11 | 5 |
muscle tissue disease | 9.93e-11 | 5 |
myopathy | 9.93e-11 | 5 |
muscular disease | 9.93e-11 | 5 |
myotonic dystrophy | 9.93e-11 | 5 |