FFCP PHASE1:Hg19::chr15:33022910..33022924,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:33022910..33022924,+ to FFCP PHASE1:Hg19::chr15:33022910..33022924,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26585 | |EntrezGene=26585 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2001 | |HGNC=2001 | ||
|TSSclassifier=strong | |||
|UniProt=O60565 | |UniProt=O60565 | ||
|association_with_transcript=18bp_to_AF045800,BC069525,CU686886,HQ448400_5end | |||
|cluster_id=chr15:33022910..33022924,+ | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_13_at_GREM1_5end | |||
|id=chr15:33022910..33022924,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.04e-29!180;CL:0000057!2.07e-22!75;CL:0000048!5.38e-17!430;CL:0000723!2.83e-16!436;CL:0000034!2.38e-15!444;CL:0002334!2.63e-15!12;CL:0002620!5.66e-13!23;CL:0000680!4.42e-12!57;CL:0000056!4.42e-12!57;CL:0000355!4.42e-12!57;CL:0000192!5.23e-12!42;CL:0000514!5.23e-12!42;CL:0002371!4.62e-11!591;CL:0000187!4.88e-10!54;CL:0000359!5.99e-10!32;CL:0002320!3.90e-09!365;CL:0000144!7.08e-09!625;CL:0000134!1.47e-08!358;CL:0000183!1.54e-08!59;CL:0000393!2.84e-08!60;CL:0000211!2.84e-08!60;CL:0000219!1.42e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.87e-20;12!CL:0002620;2.47e-19;23!CL:0000057;5.34e-10;73!CL:0000136;1.74e-09;13!CL:0002579;3.44e-09;3!CL:0002615;6.23e-09;3!CL:0000135;2.28e-08;3!CL:0000388;2.28e-08;3!CL:0002320;4.03e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.41e-31,76;CL:0002334,2.42e-20,12;CL:0002620,4.86e-19,23;CL:0000136,6.14e-13,15;CL:0000048,8.05e-13,427;CL:0000723,2.01e-12,433;CL:0000034,6.57e-12,441;CL:0002320,1.00e-11,361;CL:0000134,1.39e-11,354;CL:0000219,5.34e-10,386;CL:0002579,3.55e-09,3;CL:0002615,4.41e-09,3;CL:0000135,1.66e-08,3;CL:0000388,1.66e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.32e-07!5;DOID:450!1.32e-07!5;DOID:66!1.32e-07!5;DOID:423!1.32e-07!5;DOID:0080000!1.32e-07!5;DOID:11722!1.32e-07!5;DOID:2394!9.40e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;1.54e-13;5!DOID:450;1.54e-13;5!DOID:66;1.54e-13;5!DOID:423;1.54e-13;5!DOID:0080000;1.54e-13;5!DOID:11722;1.54e-13;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.52e-13,5;DOID:450,2.52e-13,5;DOID:66,2.52e-13,5;DOID:423,2.52e-13,5;DOID:0080000,2.52e-13,5;DOID:11722,2.52e-13,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.23e-15!83;UBERON:0002329!3.23e-15!83;UBERON:0003077!3.23e-15!83;UBERON:0003059!3.23e-15!83;UBERON:0007282!3.23e-15!83;UBERON:0009618!3.23e-15!83;UBERON:0007285!3.23e-15!83;UBERON:0004290!2.03e-12!70;UBERON:0000486!1.82e-11!82;UBERON:0002199!5.39e-11!45;UBERON:0002416!5.39e-11!45;UBERON:0001134!1.06e-10!61;UBERON:0002036!1.06e-10!61;UBERON:0003082!1.06e-10!61;UBERON:0002385!4.37e-10!63;UBERON:0001015!4.37e-10!63;UBERON:0000383!4.37e-10!63;UBERON:0005256!4.88e-10!143;UBERON:0002097!1.64e-09!40;UBERON:0003688!2.84e-09!6;UBERON:0002358!2.84e-09!6;UBERON:0003684!2.84e-09!6;UBERON:0001178!2.84e-09!6;UBERON:0003102!3.60e-09!95;UBERON:0002384!3.65e-09!375;UBERON:0002100!1.05e-08!216;UBERON:0004457!3.42e-08!12;UBERON:0000042!3.42e-08!12;UBERON:0004458!1.78e-07!49;UBERON:0001637!2.74e-07!42;UBERON:0003509!2.74e-07!42;UBERON:0004572!2.74e-07!42;UBERON:0001135!5.95e-07!15;UBERON:0000475!7.36e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.01e-16;6!UBERON:0002358;2.01e-16;6!UBERON:0003684;2.01e-16;6!UBERON:0001178;2.01e-16;6!UBERON:0004457;4.51e-14;9!UBERON:0000042;4.51e-14;9!UBERON:0002097;6.75e-12;41!UBERON:0002199;9.01e-12;46!UBERON:0002416;9.01e-12;46!UBERON:0003102;3.78e-09;50!UBERON:0007846;2.28e-08;3!UBERON:0000043;2.28e-08;3!UBERON:0007845;2.28e-08;3!UBERON:0002384;1.39e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,8.93e-18,46;UBERON:0002416,8.93e-18,46;UBERON:0003688,1.47e-16,6;UBERON:0002358,1.47e-16,6;UBERON:0003684,1.47e-16,6;UBERON:0001178,1.47e-16,6;UBERON:0002097,1.45e-14,41;UBERON:0003102,1.69e-12,99;UBERON:0002384,9.38e-12,371;UBERON:0004457,2.53e-10,12;UBERON:0000042,2.53e-10,12;UBERON:0007846,1.66e-08,3;UBERON:0000043,1.66e-08,3;UBERON:0007845,1.66e-08,3 | |||
|phase1_expression=2.90685406832891,3.63970890614671,1.9733616573436,6.00439790118782,4.46961094427288,4.36169262050184,2.53299878168311,0,0,0,0,0,0,0.247532705920093,0.331397375727916,2.6893005858071,1.20538905604795,0.730310090387373,2.92759679274304,0,0.204000691244253,0,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0,0,0.973269740605272,0.0945348171640679,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0.12663051166458,0.397227542439656,2.29469296599051,0.354668382198357,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0,0,0,2.37600571456411,13.3524141810421,0,0.718618141816238,0,0.125118519871964,0,6.58466431321257,7.04921930337745,14.4228536550333,0,2.51145489964407,2.13557388818567,2.11931901159562,2.40072876867522,4.94652140344507,1.54584324027377,2.60563598864226,1.18143432568886,4.67697624773753,1.00973509697646,2.11714766877288,0,3.55009592516614,3.22406714328449,2.20428770003634,0,0,0,0,0,0,0,0,0,9.38697193978896,10.2918550110862,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0.43596006883328,0.22001485746285,0.129271715757778,0,0.845302752556,2.12750493267896,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.579125226670317,1.2328579353023,2.50685348535854,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00034104211935,0,0.623912584592421,2.67643483195743,3.46945313074656,1.7571212248907,0.300946099727719,0,1.03473071292505,0.664225598535437,0.553107505625109,0.60818530127658,0,0,0,0,0,0,0,0,4.21783273291921,0.767309866440312,6.73584226639377,3.07533958213682,2.55853624533352,7.23842645146234,1.48418066444991,1.23367755042124,1.59805552781814,0.821271560138091,2.59627214591811,1.27831416305955,0,0,0,0.34444334449382,0.546273504020151,1.31124414959424,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,1.6068392984416,0.193341436584244,0,0,0.275673144969061,0,0,0.0852266274161009,0,0,0,0,0,0.929691098594572,3.1481234683064,0.6970372701606,0,0,0,0.9266210955196,0.429374660225974,0,0.632758849437452,0.190630193923825,0,0.42793898803392,0,0.78494864019923,0.719489830333259,1.09814811894422,0.589062011728432,0,0,1.68503382495592,0,0,0,0.136499911407986,0.424216295861138,0,0,0.66343897524122,0.438450885253763,0,0,1.01455188481352,0.30982349809975,0.281695602532241,0,0.0982490410131212,0.7133421029625,0.354761064070598,1.26664581178598,0.987884678879706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97663340258892,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,1.28071796843612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.40449825313605,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0.653174720218818,0,0,0.851940108927109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467426619694449,0.554805861502613,0.189403005275089,0.251567901752575,2.66943366478961,0.457680136793847,0.151230923763239,0.310874401165561,1.92211694986524,0.318593534327405,0,0.310525913752519,0.829412415681711,1.59505028734797,0,0.300515217994437,0,0.406870733204662,2.54588122883583,0.107410557042488,3.71227007902795,1.19428766609585,1.60011105865261,1.37358282073117,1.01024846629776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86203915588077,0,0,3.17408349321616,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0.170426809518315,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,2.20905249094162,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,6.32391530883477,1.84870251452567,1.29787968637137,0.252332849670158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,1.9307228228694,0,0,0,0,0,0,0 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| ||
|short_description=p13@GREM1 | |||
}} | }} |
Latest revision as of 04:30, 17 September 2015
Short description: | p13@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 18bp_to_AF045800, BC069525, CU686886, HQ448400_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | O60565 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.41e-31 | 76 |
preadipocyte | 2.42e-20 | 12 |
skin fibroblast | 4.86e-19 | 23 |
fat cell | 6.14e-13 | 15 |
multi fate stem cell | 8.05e-13 | 427 |
somatic stem cell | 2.01e-12 | 433 |
stem cell | 6.57e-12 | 441 |
connective tissue cell | 1.00e-11 | 361 |
mesenchymal cell | 1.39e-11 | 354 |
motile cell | 5.34e-10 | 386 |
omentum preadipocyte | 3.55e-09 | 3 |
adipocyte of omentum tissue | 4.41e-09 | 3 |
fibrocyte | 1.66e-08 | 3 |
tendon cell | 1.66e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
integument | 8.93e-18 | 46 |
integumental system | 8.93e-18 | 46 |
omentum | 1.47e-16 | 6 |
peritoneum | 1.47e-16 | 6 |
abdominal cavity | 1.47e-16 | 6 |
visceral peritoneum | 1.47e-16 | 6 |
skin of body | 1.45e-14 | 41 |
surface structure | 1.69e-12 | 99 |
connective tissue | 9.38e-12 | 371 |
cavity lining | 2.53e-10 | 12 |
serous membrane | 2.53e-10 | 12 |
dense regular connective tissue | 1.66e-08 | 3 |
tendon | 1.66e-08 | 3 |
regular connective tissue | 1.66e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.52e-13 | 5 |
myotonic disease | 2.52e-13 | 5 |
muscle tissue disease | 2.52e-13 | 5 |
myopathy | 2.52e-13 | 5 |
muscular disease | 2.52e-13 | 5 |
myotonic dystrophy | 2.52e-13 | 5 |