FFCP PHASE1:Hg19::chr8:1712006..1712024,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2055 | |EntrezGene=2055 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2079 | |HGNC=2079 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=37bp_to_ENST00000520991_5end | |association_with_transcript=37bp_to_ENST00000520991_5end | ||
|cluster_id=chr8:1712006..1712024,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_CLN8_5end | |description=CAGE_peak_3_at_CLN8_5end | ||
|id=chr8:1712006..1712024,+ | |id=chr8:1712006..1712024,+ | ||
|ontology_enrichment_celltype=CL:0000766!6.15e-26!76;CL:0000557!1.05e-24!71;CL:0000839!3.53e-24!70;CL:0002009!3.75e-24!65;CL:0002057!3.99e-23!42;CL:0002194!6.47e-23!63;CL:0000576!6.47e-23!63;CL:0000040!6.47e-23!63;CL:0000559!6.47e-23!63;CL:0000860!1.47e-19!45;CL:0000763!1.11e-11!112;CL:0000049!1.11e-11!112 | |ontology_enrichment_celltype=CL:0000766!6.15e-26!76;CL:0000557!1.05e-24!71;CL:0000839!3.53e-24!70;CL:0002009!3.75e-24!65;CL:0002057!3.99e-23!42;CL:0002194!6.47e-23!63;CL:0000576!6.47e-23!63;CL:0000040!6.47e-23!63;CL:0000559!6.47e-23!63;CL:0000860!1.47e-19!45;CL:0000763!1.11e-11!112;CL:0000049!1.11e-11!112 | ||
|ontology_enrichment_celltype_v019=CL:0000473;9.39e-20;39!CL:0000234;9.39e-20;39!CL:0000860;1.40e-19;33!CL:0002057;1.40e-19;33!CL:0000576;1.37e-15;48!CL:0000766;9.39e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.38e-33,72;CL:0000557,1.52e-31,67;CL:0002009,1.11e-30,61;CL:0000839,1.83e-30,66;CL:0000473,1.20e-29,48;CL:0000234,1.20e-29,48;CL:0002194,3.05e-29,59;CL:0000576,3.05e-29,59;CL:0000040,3.05e-29,59;CL:0000559,3.05e-29,59;CL:0000860,1.28e-25,42;CL:0002057,1.28e-25,42;CL:0000763,9.07e-16,108;CL:0000049,9.07e-16,108;CL:0000738,1.43e-10,136;CL:0002031,4.96e-09,120;CL:0002087,4.93e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.28e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.60e-22!80;UBERON:0002405!1.02e-18!115;UBERON:0002193!2.30e-18!112;UBERON:0001474!3.91e-18!86;UBERON:0002390!2.34e-16!102;UBERON:0003061!2.34e-16!102;UBERON:0003081!1.99e-15!216;UBERON:0004765!4.93e-15!101;UBERON:0001434!4.93e-15!101;UBERON:0000468!2.75e-12!659;UBERON:0000062!3.49e-11!511;UBERON:0000467!4.20e-10!625;UBERON:0000480!8.26e-10!626;UBERON:0007023!1.21e-09!115;UBERON:0002204!3.70e-08!167;UBERON:0000922!1.47e-07!612 | |ontology_enrichment_uberon=UBERON:0002371!8.60e-22!80;UBERON:0002405!1.02e-18!115;UBERON:0002193!2.30e-18!112;UBERON:0001474!3.91e-18!86;UBERON:0002390!2.34e-16!102;UBERON:0003061!2.34e-16!102;UBERON:0003081!1.99e-15!216;UBERON:0004765!4.93e-15!101;UBERON:0001434!4.93e-15!101;UBERON:0000468!2.75e-12!659;UBERON:0000062!3.49e-11!511;UBERON:0000467!4.20e-10!625;UBERON:0000480!8.26e-10!626;UBERON:0007023!1.21e-09!115;UBERON:0002204!3.70e-08!167;UBERON:0000922!1.47e-07!612 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.33e-28,76;UBERON:0002405,1.79e-26,93;UBERON:0001474,8.76e-24,82;UBERON:0002193,4.15e-23,108;UBERON:0002390,7.86e-21,98;UBERON:0003061,7.86e-21,98;UBERON:0003081,4.14e-20,203;UBERON:0004765,1.06e-19,90;UBERON:0001434,3.97e-17,100;UBERON:0000926,5.05e-10,315;UBERON:0004120,5.05e-10,315;UBERON:0006603,5.05e-10,315;UBERON:0007023,1.85e-08,114;UBERON:0000922,1.92e-08,592;UBERON:0002204,4.81e-08,167;UBERON:0005423,6.38e-08,581;UBERON:0000923,1.10e-07,560;UBERON:0010316,1.10e-07,560;UBERON:0005291,1.10e-07,560;UBERON:0006598,1.10e-07,560;UBERON:0010317,1.10e-07,560;UBERON:0002532,1.10e-07,560;UBERON:0002050,1.31e-07,564 | |||
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| ||
|short_description=p3@CLN8 | |short_description=p3@CLN8 | ||
}} | }} |
Latest revision as of 04:24, 17 September 2015
Short description: | p3@CLN8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CLN8_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 37bp_to_ENST00000520991_5end |
EntrezGene: | CLN8 |
HGNC: | 2079 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.38e-33 | 72 |
granulocyte monocyte progenitor cell | 1.52e-31 | 67 |
macrophage dendritic cell progenitor | 1.11e-30 | 61 |
myeloid lineage restricted progenitor cell | 1.83e-30 | 66 |
defensive cell | 1.20e-29 | 48 |
phagocyte | 1.20e-29 | 48 |
monopoietic cell | 3.05e-29 | 59 |
monocyte | 3.05e-29 | 59 |
monoblast | 3.05e-29 | 59 |
promonocyte | 3.05e-29 | 59 |
classical monocyte | 1.28e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.28e-25 | 42 |
myeloid cell | 9.07e-16 | 108 |
common myeloid progenitor | 9.07e-16 | 108 |
leukocyte | 1.43e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 4.96e-09 | 120 |
nongranular leukocyte | 4.93e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.33e-28 | 76 |
immune system | 1.79e-26 | 93 |
bone element | 8.76e-24 | 82 |
hemolymphoid system | 4.15e-23 | 108 |
hematopoietic system | 7.86e-21 | 98 |
blood island | 7.86e-21 | 98 |
lateral plate mesoderm | 4.14e-20 | 203 |
skeletal element | 1.06e-19 | 90 |
skeletal system | 3.97e-17 | 100 |
mesoderm | 5.05e-10 | 315 |
mesoderm-derived structure | 5.05e-10 | 315 |
presumptive mesoderm | 5.05e-10 | 315 |
adult organism | 1.85e-08 | 114 |
embryo | 1.92e-08 | 592 |
musculoskeletal system | 4.81e-08 | 167 |
developing anatomical structure | 6.38e-08 | 581 |
germ layer | 1.10e-07 | 560 |
germ layer / neural crest | 1.10e-07 | 560 |
embryonic tissue | 1.10e-07 | 560 |
presumptive structure | 1.10e-07 | 560 |
germ layer / neural crest derived structure | 1.10e-07 | 560 |
epiblast (generic) | 1.10e-07 | 560 |
embryonic structure | 1.31e-07 | 564 |