FFCP PHASE1:Hg19::chr13:32889654..32889678,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=675 | |EntrezGene=675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1101 | |HGNC=1101 | ||
|TSSclassifier=strong | |||
|UniProt=E9PIQ1 | |UniProt=E9PIQ1 | ||
|association_with_transcript=12bp_to_ENST00000530893_5end | |association_with_transcript=12bp_to_ENST00000530893_5end | ||
|cluster_id=chr13:32889654..32889678,+ | |||
|description=CAGE_peak_2_at_BRCA2_5end | |description=CAGE_peak_2_at_BRCA2_5end | ||
|id=chr13:32889654..32889678,+ | |id=chr13:32889654..32889678,+ | ||
|ontology_enrichment_celltype=CL:0000037!2.99e-28!172;CL:0000566!2.99e-28!172;CL:0000988!1.89e-26!182;CL:0002032!1.29e-25!165;CL:0000837!1.29e-25!165;CL:0000738!6.40e-18!140;CL:0000763!2.71e-17!112;CL:0000049!2.71e-17!112;CL:0002031!1.48e-15!124;CL:0002087!1.49e-14!119;CL:0000219!2.03e-11!390;CL:0000012!8.24e-10!682;CL:0000548!2.84e-09!679;CL:0000004!2.84e-09!679;CL:0000255!2.84e-09!679;CL:0000134!2.11e-08!358;CL:0000557!2.17e-08!71;CL:0000839!5.02e-08!70;CL:0000542!5.05e-08!53;CL:0000051!5.05e-08!53;CL:0000838!1.26e-07!52;CL:0002009!1.47e-07!65;CL:0000003!1.60e-07!722;CL:0002320!3.91e-07!365;CL:0002194!6.09e-07!63;CL:0000576!6.09e-07!63;CL:0000040!6.09e-07!63;CL:0000559!6.09e-07!63;CL:0000766!7.27e-07!76;CL:0000063!9.40e-07!578;CL:0002057!9.98e-07!42 | |ontology_enrichment_celltype=CL:0000037!2.99e-28!172;CL:0000566!2.99e-28!172;CL:0000988!1.89e-26!182;CL:0002032!1.29e-25!165;CL:0000837!1.29e-25!165;CL:0000738!6.40e-18!140;CL:0000763!2.71e-17!112;CL:0000049!2.71e-17!112;CL:0002031!1.48e-15!124;CL:0002087!1.49e-14!119;CL:0000219!2.03e-11!390;CL:0000012!8.24e-10!682;CL:0000548!2.84e-09!679;CL:0000004!2.84e-09!679;CL:0000255!2.84e-09!679;CL:0000134!2.11e-08!358;CL:0000557!2.17e-08!71;CL:0000839!5.02e-08!70;CL:0000542!5.05e-08!53;CL:0000051!5.05e-08!53;CL:0000838!1.26e-07!52;CL:0002009!1.47e-07!65;CL:0000003!1.60e-07!722;CL:0002320!3.91e-07!365;CL:0002194!6.09e-07!63;CL:0000576!6.09e-07!63;CL:0000040!6.09e-07!63;CL:0000559!6.09e-07!63;CL:0000766!7.27e-07!76;CL:0000063!9.40e-07!578;CL:0002057!9.98e-07!42 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.23e-32,168;CL:0000988,5.66e-31,177;CL:0002032,4.47e-29,161;CL:0000837,4.47e-29,161;CL:0000738,2.57e-20,136;CL:0000763,1.77e-18,108;CL:0000049,1.77e-18,108;CL:0002031,1.57e-17,120;CL:0002087,4.25e-16,115;CL:0000219,4.14e-12,386;CL:0000542,5.14e-10,53;CL:0000051,5.14e-10,53;CL:0000838,1.60e-09,52;CL:0000134,7.18e-09,354;CL:0000557,1.92e-08,67;CL:0000839,5.04e-08,66;CL:0002320,7.04e-08,361;CL:0002009,1.36e-07,61;CL:0000473,5.12e-07,48;CL:0000234,5.12e-07,48;CL:0000860,5.20e-07,42;CL:0002057,5.20e-07,42;CL:0000766,5.40e-07,72;CL:0002194,6.98e-07,59;CL:0000576,6.98e-07,59;CL:0000040,6.98e-07,59;CL:0000559,6.98e-07,59 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!4.57e-27!235;DOID:14566!4.82e-26!239;DOID:2531!6.78e-18!51;DOID:0060083!6.78e-18!51;DOID:0050686!3.49e-15!137;DOID:1240!2.85e-14!39;DOID:0050687!6.33e-12!143;DOID:8692!1.15e-10!31;DOID:305!1.50e-07!106 | |ontology_enrichment_disease=DOID:162!4.57e-27!235;DOID:14566!4.82e-26!239;DOID:2531!6.78e-18!51;DOID:0060083!6.78e-18!51;DOID:0050686!3.49e-15!137;DOID:1240!2.85e-14!39;DOID:0050687!6.33e-12!143;DOID:8692!1.15e-10!31;DOID:305!1.50e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:2531;3.23e-12;51!DOID:0060083;3.23e-12;51!DOID:1240;5.65e-12;39!DOID:8692;1.25e-10;31!DOID:0060058;1.77e-07;10 | |ontology_enrichment_disease_v019=DOID:2531;3.23e-12;51!DOID:0060083;3.23e-12;51!DOID:1240;5.65e-12;39!DOID:8692;1.25e-10;31!DOID:0060058;1.77e-07;10 | ||
|ontology_enrichment_disease_v019_2=DOID:162,3.61e-21,235;DOID:14566,1.51e-20,239;DOID:2531,1.66e-20,51;DOID:0060083,1.66e-20,51;DOID:1240,9.85e-16,39;DOID:0050686,1.83e-13,137;DOID:8692,2.03e-11,31;DOID:0050687,6.46e-08,143;DOID:0060058,1.81e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0001474!6.52e-09!86;UBERON:0002371!5.00e-08!80;UBERON:0002384!5.59e-08!375;UBERON:0002390!6.44e-08!102;UBERON:0003061!6.44e-08!102;UBERON:0004765!1.26e-07!101;UBERON:0001434!1.26e-07!101 | |ontology_enrichment_uberon=UBERON:0001474!6.52e-09!86;UBERON:0002371!5.00e-08!80;UBERON:0002384!5.59e-08!375;UBERON:0002390!6.44e-08!102;UBERON:0003061!6.44e-08!102;UBERON:0004765!1.26e-07!101;UBERON:0001434!1.26e-07!101 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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| ||
|short_description=p2@BRCA2 | |short_description=p2@BRCA2 | ||
}} | }} |
Latest revision as of 03:59, 17 September 2015
Short description: | p2@BRCA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BRCA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENST00000530893_5end |
EntrezGene: | BRCA2 |
HGNC: | 1101 |
UniProt: | E9PIQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.23e-32 | 168 |
hematopoietic cell | 5.66e-31 | 177 |
hematopoietic oligopotent progenitor cell | 4.47e-29 | 161 |
hematopoietic multipotent progenitor cell | 4.47e-29 | 161 |
leukocyte | 2.57e-20 | 136 |
myeloid cell | 1.77e-18 | 108 |
common myeloid progenitor | 1.77e-18 | 108 |
hematopoietic lineage restricted progenitor cell | 1.57e-17 | 120 |
nongranular leukocyte | 4.25e-16 | 115 |
motile cell | 4.14e-12 | 386 |
lymphocyte | 5.14e-10 | 53 |
common lymphoid progenitor | 5.14e-10 | 53 |
lymphoid lineage restricted progenitor cell | 1.60e-09 | 52 |
mesenchymal cell | 7.18e-09 | 354 |
granulocyte monocyte progenitor cell | 1.92e-08 | 67 |
myeloid lineage restricted progenitor cell | 5.04e-08 | 66 |
connective tissue cell | 7.04e-08 | 361 |
macrophage dendritic cell progenitor | 1.36e-07 | 61 |
defensive cell | 5.12e-07 | 48 |
phagocyte | 5.12e-07 | 48 |
classical monocyte | 5.20e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.20e-07 | 42 |
myeloid leukocyte | 5.40e-07 | 72 |
monopoietic cell | 6.98e-07 | 59 |
monocyte | 6.98e-07 | 59 |
monoblast | 6.98e-07 | 59 |
promonocyte | 6.98e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.36e-09 | 371 |
bone element | 1.75e-08 | 82 |
bone marrow | 8.18e-08 | 76 |
hematopoietic system | 1.13e-07 | 98 |
blood island | 1.13e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.61e-21 | 235 |
disease of cellular proliferation | 1.51e-20 | 239 |
hematologic cancer | 1.66e-20 | 51 |
immune system cancer | 1.66e-20 | 51 |
leukemia | 9.85e-16 | 39 |
organ system cancer | 1.83e-13 | 137 |
myeloid leukemia | 2.03e-11 | 31 |
cell type cancer | 6.46e-08 | 143 |
lymphoma | 1.81e-07 | 10 |