FFCP PHASE1:Hg19::chr6:21597370..21597408,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:21597370..21597408,+
|short_description=p5@SOX4
|description=CAGE_peak_5_at_SOX4_5end
|association_with_transcript=-252bp_to_AJ420500_5end
|EntrezGene=665...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6659 | |EntrezGene=6659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11200 | |HGNC=11200 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-252bp_to_AJ420500_5end | |||
|cluster_id=chr6:21597370..21597408,+ | |||
|coexpression_cluster_id=C1086 | |||
|description=CAGE_peak_5_at_SOX4_5end | |||
|id=chr6:21597370..21597408,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.22e-21!254;CL:0002321!4.62e-10!248;CL:0000220!1.69e-09!246;CL:0000012!3.89e-09!682;CL:0000548!1.35e-08!679;CL:0000004!1.35e-08!679;CL:0000255!1.35e-08!679 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.69e-08;24!CL:1000449;1.68e-07;15!CL:0002078;5.38e-07;45!CL:1000497;5.53e-07;17!CL:0002518;5.53e-07;17!CL:0000540;7.11e-07;6!CL:0000404;7.11e-07;6!CL:0002681;7.28e-07;12!CL:0002584;7.28e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.29e-20,253;CL:0002078,6.64e-09,45;CL:0002321,1.02e-08,250;CL:0002139,3.71e-08,24;CL:0000213,4.42e-08,58;CL:0000215,4.42e-08,58;CL:0000115,1.32e-07,36;CL:1000449,2.93e-07,15;CL:0000540,8.19e-07,6;CL:0000031,8.19e-07,6;CL:0000404,8.19e-07,6;CL:1000497,8.88e-07,17;CL:0002518,8.88e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000031;7.11e-07;6 | |||
|ontology_enrichment_disease=DOID:14566!1.60e-12!239;DOID:162!2.03e-12!235;DOID:305!6.19e-09!106;DOID:0050687!8.22e-09!143;DOID:0050686!4.60e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.16e-10,239;DOID:162,6.41e-10,235;DOID:0050686,1.58e-07,137;DOID:305,2.95e-07,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.31e-08;30!UBERON:0001008;2.31e-08;30!UBERON:0000353;9.11e-08;15!UBERON:0006555;1.68e-07;15!UBERON:0004819;1.68e-07;15!UBERON:0001285;1.68e-07;15!UBERON:0007684;1.68e-07;15!UBERON:0001225;7.28e-07;12!UBERON:0008987;7.28e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000353,1.57e-07,15;UBERON:0004211,2.93e-07,15;UBERON:0009773,2.93e-07,15;UBERON:0001231,2.93e-07,15;UBERON:0001285,2.93e-07,15;UBERON:0007684,2.93e-07,15;UBERON:0004208,2.93e-07,15 | |||
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| ||
|short_description=p5@SOX4 | |||
}} | }} |
Latest revision as of 03:54, 17 September 2015
Short description: | p5@SOX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SOX4_5end |
Coexpression cluster: | C1086_occipital_parietal_temporal_duodenum_small_Neurons_transitionalcell |
Association with transcript: | -252bp_to_AJ420500_5end |
EntrezGene: | SOX4 |
HGNC: | 11200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.29e-20 | 253 |
meso-epithelial cell | 6.64e-09 | 45 |
embryonic cell | 1.02e-08 | 250 |
endothelial cell of vascular tree | 3.71e-08 | 24 |
lining cell | 4.42e-08 | 58 |
barrier cell | 4.42e-08 | 58 |
endothelial cell | 1.32e-07 | 36 |
epithelial cell of nephron | 2.93e-07 | 15 |
neuron | 8.19e-07 | 6 |
neuroblast | 8.19e-07 | 6 |
electrically signaling cell | 8.19e-07 | 6 |
kidney cell | 8.88e-07 | 17 |
kidney epithelial cell | 8.88e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
parenchyma | 1.57e-07 | 15 |
nephron epithelium | 2.93e-07 | 15 |
renal tubule | 2.93e-07 | 15 |
nephron tubule | 2.93e-07 | 15 |
nephron | 2.93e-07 | 15 |
uriniferous tubule | 2.93e-07 | 15 |
nephrogenic mesenchyme | 2.93e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.16e-10 | 239 |
cancer | 6.41e-10 | 235 |
organ system cancer | 1.58e-07 | 137 |
carcinoma | 2.95e-07 | 106 |