FFCP PHASE1:Hg19::chr2:137522983..137523027,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80731 | |EntrezGene=80731 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29348 | |HGNC=29348 | ||
|TSSclassifier=strong | |||
|UniProt=E7EM75 | |UniProt=E7EM75 | ||
|association_with_transcript=-87bp_to_ENST00000409968,ENST00000472720,uc010zbj.1_5end | |association_with_transcript=-87bp_to_ENST00000409968,ENST00000472720,uc010zbj.1_5end | ||
|cluster_id=chr2:137522983..137523027,+ | |||
|coexpression_cluster_id=C135 | |coexpression_cluster_id=C135 | ||
|description=CAGE_peak_4_at_THSD7B_5end | |description=CAGE_peak_4_at_THSD7B_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000242!2.99e-08!2 | |ontology_enrichment_celltype=CL:0000242!2.99e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;2.98e-44;2!CL:0000242;2.98e-44;2!CL:0000333;7.24e-19;5!CL:0000312;2.11e-18;5!CL:0000240;1.63e-15;6!CL:0000311;1.63e-15;6!CL:0000079;1.63e-15;6!CL:0000237;1.63e-15;6!CL:0000362;1.12e-10;9!CL:0002159;3.44e-07;14!CL:0002321;6.40e-07;15 | |ontology_enrichment_celltype_v019=CL:0000123;2.98e-44;2!CL:0000242;2.98e-44;2!CL:0000333;7.24e-19;5!CL:0000312;2.11e-18;5!CL:0000240;1.63e-15;6!CL:0000311;1.63e-15;6!CL:0000079;1.63e-15;6!CL:0000237;1.63e-15;6!CL:0000362;1.12e-10;9!CL:0002159;3.44e-07;14!CL:0002321;6.40e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.98e-44,2;CL:0000312,2.11e-18,5;CL:0000240,1.63e-15,6;CL:0000311,1.63e-15,6;CL:0000079,1.63e-15,6;CL:0000237,1.63e-15,6;CL:0000036,1.63e-15,6;CL:0000357,1.63e-15,6;CL:0000114,1.63e-15,6;CL:0000362,1.12e-10,9;CL:0000333,1.28e-08,41;CL:0002159,3.44e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000357;1.63e-15;6!CL:0000114;1.63e-15;6 | |ontology_enrichment_development_v019=CL:0000357;1.63e-15;6!CL:0000114;1.63e-15;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;6.71e-16;6!DOID:171;6.20e-10;10 | |ontology_enrichment_disease_v019=DOID:169;6.71e-16;6!DOID:171;6.20e-10;10 | ||
|ontology_enrichment_disease_v019_2=DOID:169,6.71e-16,6;DOID:171,6.20e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.23e-25!57;UBERON:0005068!1.23e-25!57;UBERON:0006241!1.23e-25!57;UBERON:0007135!1.23e-25!57;UBERON:0002780!1.92e-25!41;UBERON:0001890!1.92e-25!41;UBERON:0006240!1.92e-25!41;UBERON:0001893!3.11e-25!34;UBERON:0003080!9.92e-25!42;UBERON:0002616!1.43e-24!59;UBERON:0002619!1.62e-24!22;UBERON:0000073!5.84e-24!94;UBERON:0001016!5.84e-24!94;UBERON:0001950!2.48e-23!20;UBERON:0002791!4.57e-23!33;UBERON:0002020!2.03e-22!34;UBERON:0003528!2.03e-22!34;UBERON:0000955!9.40e-22!69;UBERON:0006238!9.40e-22!69;UBERON:0000956!2.72e-21!25;UBERON:0000203!2.72e-21!25;UBERON:0001869!2.79e-21!32;UBERON:0005743!2.90e-21!86;UBERON:0001017!1.01e-20!82;UBERON:0002346!1.96e-20!90;UBERON:0003075!5.24e-20!86;UBERON:0007284!5.24e-20!86;UBERON:0003056!2.00e-19!61;UBERON:0000924!6.00e-16!173;UBERON:0006601!6.00e-16!173;UBERON:0000153!1.22e-15!129;UBERON:0007811!1.22e-15!129;UBERON:0004121!2.00e-15!169;UBERON:0007023!1.42e-14!115;UBERON:0000033!3.19e-14!123;UBERON:0000200!5.90e-13!6;UBERON:0001872!1.30e-10!5;UBERON:0001871!7.08e-10!7;UBERON:0002298!8.26e-10!8;UBERON:0001870!1.56e-07!2;UBERON:0000013!8.76e-07!5;UBERON:0002410!8.76e-07!5;UBERON:0000025!9.88e-07!194 | |ontology_enrichment_uberon=UBERON:0001049!1.23e-25!57;UBERON:0005068!1.23e-25!57;UBERON:0006241!1.23e-25!57;UBERON:0007135!1.23e-25!57;UBERON:0002780!1.92e-25!41;UBERON:0001890!1.92e-25!41;UBERON:0006240!1.92e-25!41;UBERON:0001893!3.11e-25!34;UBERON:0003080!9.92e-25!42;UBERON:0002616!1.43e-24!59;UBERON:0002619!1.62e-24!22;UBERON:0000073!5.84e-24!94;UBERON:0001016!5.84e-24!94;UBERON:0001950!2.48e-23!20;UBERON:0002791!4.57e-23!33;UBERON:0002020!2.03e-22!34;UBERON:0003528!2.03e-22!34;UBERON:0000955!9.40e-22!69;UBERON:0006238!9.40e-22!69;UBERON:0000956!2.72e-21!25;UBERON:0000203!2.72e-21!25;UBERON:0001869!2.79e-21!32;UBERON:0005743!2.90e-21!86;UBERON:0001017!1.01e-20!82;UBERON:0002346!1.96e-20!90;UBERON:0003075!5.24e-20!86;UBERON:0007284!5.24e-20!86;UBERON:0003056!2.00e-19!61;UBERON:0000924!6.00e-16!173;UBERON:0006601!6.00e-16!173;UBERON:0000153!1.22e-15!129;UBERON:0007811!1.22e-15!129;UBERON:0004121!2.00e-15!169;UBERON:0007023!1.42e-14!115;UBERON:0000033!3.19e-14!123;UBERON:0000200!5.90e-13!6;UBERON:0001872!1.30e-10!5;UBERON:0001871!7.08e-10!7;UBERON:0002298!8.26e-10!8;UBERON:0001870!1.56e-07!2;UBERON:0000013!8.76e-07!5;UBERON:0002410!8.76e-07!5;UBERON:0000025!9.88e-07!194 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;7.24e-19;5!UBERON:0002410;7.24e-19;5!UBERON:0000010;6.22e-11;8!UBERON:0002114;1.04e-08;2!UBERON:0000922;2.37e-07;49!UBERON:0001003;9.09e-07;15!UBERON:0007376;9.09e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0000013;7.24e-19;5!UBERON:0002410;7.24e-19;5!UBERON:0000010;6.22e-11;8!UBERON:0002114;1.04e-08;2!UBERON:0000922;2.37e-07;49!UBERON:0001003;9.09e-07;15!UBERON:0007376;9.09e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,7.24e-19,5;UBERON:0002410,7.24e-19,5;UBERON:0000010,6.22e-11,8;UBERON:0002114,1.04e-08,2;UBERON:0001003,9.09e-07,15;UBERON:0007376,9.09e-07,15;UBERON:0007383,9.09e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.397589304964456,0,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0.597743964753209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07564790076435,0.741383633679017,0.417687798021821,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0.160753148465019,0,0,0,0,0.364497339948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0.221858103073705,0.18628920882415,0,0,0,0,0,1.40500471742064,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0.320075189082423,0,0,0,0,0.622077260032973,5.37156359475337,0,0.157265941855896,8.29993250259306,0,0,0.123935764259002,0,0,0,0.80057074828547,0,0,0.192687675289379,0,0,0,1.26035848110859,0,0.645902582527404,0,0,0.235939446695481,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.206686796501184,0.317079050969534,2.7348740450911,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0.883606528698812,0.0657727735628491,0,0,0.313972371402056,0,0,0,0,0,0.500335809236594,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0.769583617218004,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.203974470572744,2.61810414204226,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0.103432995861895,0,0.476128862927481,0,0.0620747142958579,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.397589304964456,0,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0.597743964753209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07564790076435,0.741383633679017,0.417687798021821,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0.160753148465019,0,0,0,0,0.364497339948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0.221858103073705,0.18628920882415,0,0,0,0,0,1.40500471742064,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0.320075189082423,0,0,0,0,0.622077260032973,5.37156359475337,0,0.157265941855896,8.29993250259306,0,0,0.123935764259002,0,0,0,0.80057074828547,0,0,0.192687675289379,0,0,0,1.26035848110859,0,0.645902582527404,0,0,0.235939446695481,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.206686796501184,0.317079050969534,2.7348740450911,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0.883606528698812,0.0657727735628491,0,0,0.313972371402056,0,0,0,0,0,0.500335809236594,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0.769583617218004,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.203974470572744,2.61810414204226,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0.103432995861895,0,0.476128862927481,0,0.0620747142958579,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@THSD7B | |short_description=p4@THSD7B | ||
}} | }} |
Latest revision as of 03:41, 17 September 2015
Short description: | p4@THSD7B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_THSD7B_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | -87bp_to_ENST00000409968, ENST00000472720, uc010zbj.1_5end |
EntrezGene: | THSD7B |
HGNC: | 29348 |
UniProt: | E7EM75 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.98e-44 | 2 |
keratinocyte | 2.11e-18 | 5 |
stratified squamous epithelial cell | 1.63e-15 | 6 |
keratin accumulating cell | 1.63e-15 | 6 |
stratified epithelial cell | 1.63e-15 | 6 |
keratinizing barrier epithelial cell | 1.63e-15 | 6 |
epithelial fate stem cell | 1.63e-15 | 6 |
stratified epithelial stem cell | 1.63e-15 | 6 |
surface ectodermal cell | 1.63e-15 | 6 |
epidermal cell | 1.12e-10 | 9 |
migratory neural crest cell | 1.28e-08 | 41 |
general ecto-epithelial cell | 3.44e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 7.24e-19 | 5 |
autonomic nervous system | 7.24e-19 | 5 |
peripheral nervous system | 6.22e-11 | 8 |
duodenum | 1.04e-08 | 2 |
skin epidermis | 9.09e-07 | 15 |
outer epithelium | 9.09e-07 | 15 |
enveloping layer of ectoderm | 9.09e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 6.71e-16 | 6 |
neuroectodermal tumor | 6.20e-10 | 10 |