FFCP PHASE1:Hg19::chr10:13390252..13390269,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22929 | |EntrezGene=22929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19685 | |HGNC=19685 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T5U9,D6PSQ9 | |UniProt=Q5T5U9,D6PSQ9 | ||
|association_with_transcript=10bp_to_ENST00000378614,ENST00000545675,uc001imk.2,uc009xje.2,uc010qbt.1_5end | |association_with_transcript=10bp_to_ENST00000378614,ENST00000545675,uc001imk.2,uc009xje.2,uc010qbt.1_5end | ||
|cluster_id=chr10:13390252..13390269,- | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_5_at_SEPHS1_5end | |description=CAGE_peak_5_at_SEPHS1_5end | ||
|id=chr10:13390252..13390269,- | |id=chr10:13390252..13390269,- | ||
|ontology_enrichment_celltype=CL:0000066!3.61e-13!254;CL:0000012!4.85e-08!682;CL:0000548!6.37e-08!679;CL:0000004!6.37e-08!679;CL:0000255!6.37e-08!679;CL:0000181!3.45e-07!12;CL:0000417!3.45e-07!12;CL:0000668!3.45e-07!12;CL:0000414!3.45e-07!12;CL:0000412!3.45e-07!12;CL:0000182!3.45e-07!12 | |ontology_enrichment_celltype=CL:0000066!3.61e-13!254;CL:0000012!4.85e-08!682;CL:0000548!6.37e-08!679;CL:0000004!6.37e-08!679;CL:0000255!6.37e-08!679;CL:0000181!3.45e-07!12;CL:0000417!3.45e-07!12;CL:0000668!3.45e-07!12;CL:0000414!3.45e-07!12;CL:0000412!3.45e-07!12;CL:0000182!3.45e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.96e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.64e-09,253;CL:0000182,1.82e-08,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.44e-25!235;DOID:14566!7.70e-24!239;DOID:0050687!1.77e-16!143;DOID:305!1.16e-13!106;DOID:0050686!6.16e-10!137 | |ontology_enrichment_disease=DOID:162!2.44e-25!235;DOID:14566!7.70e-24!239;DOID:0050687!1.77e-16!143;DOID:305!1.16e-13!106;DOID:0050686!6.16e-10!137 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.83e-07;22!DOID:2994;7.83e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.22e-21,235;DOID:14566,1.29e-19,239;DOID:0050687,3.21e-14,143;DOID:305,2.37e-11,106;DOID:0050686,8.67e-08,137;DOID:3095,4.64e-07,22;DOID:2994,4.64e-07,22;DOID:2531,9.61e-07,51;DOID:0060083,9.61e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0005172!1.86e-08!55;UBERON:0005173!1.86e-08!55;UBERON:0003104!4.09e-07!238;UBERON:0009142!4.09e-07!238;UBERON:0002417!5.58e-07!61;UBERON:0000916!5.58e-07!61;UBERON:0001007!5.96e-07!155;UBERON:0001555!5.96e-07!155;UBERON:0007026!5.96e-07!155;UBERON:0001048!6.65e-07!168 | |ontology_enrichment_uberon=UBERON:0005172!1.86e-08!55;UBERON:0005173!1.86e-08!55;UBERON:0003104!4.09e-07!238;UBERON:0009142!4.09e-07!238;UBERON:0002417!5.58e-07!61;UBERON:0000916!5.58e-07!61;UBERON:0001007!5.96e-07!155;UBERON:0001555!5.96e-07!155;UBERON:0007026!5.96e-07!155;UBERON:0001048!6.65e-07!168 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.74e-07;19!UBERON:0006925;4.74e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,5.38e-08,54;UBERON:0005173,5.38e-08,54;UBERON:0002107,3.80e-07,19;UBERON:0006925,3.80e-07,19;UBERON:0008836,3.80e-07,19;UBERON:0008835,4.32e-07,22;UBERON:0003894,4.32e-07,22;UBERON:0007499,6.13e-07,25;UBERON:0009497,9.61e-07,25;UBERON:0000015,9.61e-07,25;UBERON:0002423,9.61e-07,25;UBERON:0006235,9.61e-07,25;UBERON:0004161,9.61e-07,25 | |||
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| ||
|short_description=p5@SEPHS1 | |short_description=p5@SEPHS1 | ||
}} | }} |
Latest revision as of 03:41, 17 September 2015
Short description: | p5@SEPHS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SEPHS1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 10bp_to_ENST00000378614, ENST00000545675, uc001imk.2, uc009xje.2, uc010qbt.1_5end |
EntrezGene: | SEPHS1 |
HGNC: | 19685 |
UniProt: | Q5T5U9D6PSQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.64e-09 | 253 |
hepatocyte | 1.82e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
abdomen element | 5.38e-08 | 54 |
abdominal segment element | 5.38e-08 | 54 |
liver | 3.80e-07 | 19 |
digestive gland | 3.80e-07 | 19 |
liver bud | 3.80e-07 | 19 |
hepatic diverticulum | 4.32e-07 | 22 |
liver primordium | 4.32e-07 | 22 |
epithelial sac | 6.13e-07 | 25 |
epithelium of foregut-midgut junction | 9.61e-07 | 25 |
anatomical boundary | 9.61e-07 | 25 |
hepatobiliary system | 9.61e-07 | 25 |
foregut-midgut junction | 9.61e-07 | 25 |
septum transversum | 9.61e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.22e-21 | 235 |
disease of cellular proliferation | 1.29e-19 | 239 |
cell type cancer | 3.21e-14 | 143 |
carcinoma | 2.37e-11 | 106 |
organ system cancer | 8.67e-08 | 137 |
germ cell and embryonal cancer | 4.64e-07 | 22 |
germ cell cancer | 4.64e-07 | 22 |
hematologic cancer | 9.61e-07 | 51 |
immune system cancer | 9.61e-07 | 51 |