FFCP PHASE1:Hg19::chr9:32526184..32526261,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23586 | |EntrezGene=23586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19102 | |HGNC=19102 | ||
|TSSclassifier=strong | |||
|UniProt=A2A376,F5H5W6 | |UniProt=A2A376,F5H5W6 | ||
|association_with_transcript=0bp_to_ENST00000379868,ENST00000545044_5end | |association_with_transcript=0bp_to_ENST00000379868,ENST00000545044_5end | ||
|cluster_id=chr9:32526184..32526261,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_DDX58_5end | |description=CAGE_peak_1_at_DDX58_5end | ||
|id=chr9:32526184..32526261,- | |id=chr9:32526184..32526261,- | ||
|ontology_enrichment_celltype=CL:0002057!1.17e-18!42;CL:0000860!4.48e-16!45;CL:0000766!5.03e-16!76;CL:0000557!3.97e-14!71;CL:0002009!1.33e-13!65;CL:0002194!2.26e-13!63;CL:0000576!2.26e-13!63;CL:0000040!2.26e-13!63;CL:0000559!2.26e-13!63;CL:0000839!3.68e-13!70 | |ontology_enrichment_celltype=CL:0002057!1.17e-18!42;CL:0000860!4.48e-16!45;CL:0000766!5.03e-16!76;CL:0000557!3.97e-14!71;CL:0002009!1.33e-13!65;CL:0002194!2.26e-13!63;CL:0000576!2.26e-13!63;CL:0000040!2.26e-13!63;CL:0000559!2.26e-13!63;CL:0000839!3.68e-13!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.24e-15;33!CL:0002057;2.24e-15;33!CL:0000473;3.52e-14;39!CL:0000234;3.52e-14;39!CL:0000576;2.97e-10;48!CL:0000766;4.56e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.19e-20,48;CL:0000234,4.19e-20,48;CL:0000860,1.15e-18,42;CL:0002057,1.15e-18,42;CL:0000766,9.55e-18,72;CL:0000557,8.24e-16,67;CL:0002009,2.60e-15,61;CL:0002194,4.22e-15,59;CL:0000576,4.22e-15,59;CL:0000040,4.22e-15,59;CL:0000559,4.22e-15,59;CL:0000839,1.06e-14,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.46e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.16e-13!112;UBERON:0002390!4.28e-13!102;UBERON:0003061!4.28e-13!102;UBERON:0002371!6.03e-12!80;UBERON:0001474!1.57e-11!86;UBERON:0004765!2.60e-11!101;UBERON:0001434!2.60e-11!101;UBERON:0000926!1.50e-09!448;UBERON:0004120!1.50e-09!448;UBERON:0006603!1.50e-09!448;UBERON:0003081!2.55e-09!216;UBERON:0000467!3.78e-09!625;UBERON:0000480!7.24e-09!626;UBERON:0002405!4.35e-08!115;UBERON:0002204!6.70e-08!167;UBERON:0000468!2.71e-07!659;UBERON:0002050!8.49e-07!605;UBERON:0005423!8.49e-07!605;UBERON:0000923!9.14e-07!604;UBERON:0005291!9.14e-07!604;UBERON:0006598!9.14e-07!604;UBERON:0002532!9.14e-07!604 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.31e-15,108;UBERON:0002390,2.87e-14,98;UBERON:0003061,2.87e-14,98;UBERON:0002371,2.71e-13,76;UBERON:0002405,8.40e-13,93;UBERON:0001474,8.93e-13,82;UBERON:0004765,2.14e-12,90;UBERON:0001434,1.20e-11,100;UBERON:0003081,2.38e-10,203;UBERON:0000926,1.42e-08,315;UBERON:0004120,1.42e-08,315;UBERON:0006603,1.42e-08,315;UBERON:0002204,5.33e-08,167 | |||
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| ||
|short_description=p1@DDX58 | |short_description=p1@DDX58 | ||
}} | }} |
Latest revision as of 02:36, 17 September 2015
Short description: | p1@DDX58 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DDX58_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000379868, ENST00000545044_5end |
EntrezGene: | DDX58 |
HGNC: | 19102 |
UniProt: | A2A376F5H5W6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.19e-20 | 48 |
phagocyte | 4.19e-20 | 48 |
classical monocyte | 1.15e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.15e-18 | 42 |
myeloid leukocyte | 9.55e-18 | 72 |
granulocyte monocyte progenitor cell | 8.24e-16 | 67 |
macrophage dendritic cell progenitor | 2.60e-15 | 61 |
monopoietic cell | 4.22e-15 | 59 |
monocyte | 4.22e-15 | 59 |
monoblast | 4.22e-15 | 59 |
promonocyte | 4.22e-15 | 59 |
myeloid lineage restricted progenitor cell | 1.06e-14 | 66 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 9.31e-15 | 108 |
hematopoietic system | 2.87e-14 | 98 |
blood island | 2.87e-14 | 98 |
bone marrow | 2.71e-13 | 76 |
immune system | 8.40e-13 | 93 |
bone element | 8.93e-13 | 82 |
skeletal element | 2.14e-12 | 90 |
skeletal system | 1.20e-11 | 100 |
lateral plate mesoderm | 2.38e-10 | 203 |
mesoderm | 1.42e-08 | 315 |
mesoderm-derived structure | 1.42e-08 | 315 |
presumptive mesoderm | 1.42e-08 | 315 |
musculoskeletal system | 5.33e-08 | 167 |