FFCP PHASE1:Hg19::chr15:26874300..26874311,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2562 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4083 | |||
|TSSclassifier=strong | |||
|UniProt=G3V3U3 | |||
|association_with_transcript=13bp_to_ENST00000556166,uc001zbc.2,uc010uae.1_5end | |||
|cluster_id=chr15:26874300..26874311,- | |||
|description=CAGE_peak_6_at_GABRB3_5end | |||
|id=chr15:26874300..26874311,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002178;1.29e-21;3!CL:0000082;2.97e-13;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.29e-21,3;CL:0000082,2.61e-13,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;7.05e-13;30!UBERON:0008947;8.84e-09;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1324;1.07e-16;15!DOID:0050615;1.12e-15;16!DOID:3119;1.64e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1324,9.11e-17,15;DOID:0050615,9.66e-16,16;DOID:3119,1.67e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.38e-10!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000945;2.23e-13;5!UBERON:0010039;2.23e-13;5!UBERON:0004802;2.97e-13;19!UBERON:0000115;2.97e-13;19!UBERON:0002048;1.73e-11;22!UBERON:0004807;1.73e-11;22!UBERON:0000117;1.73e-11;22!UBERON:0000171;1.73e-11;22!UBERON:0000170;1.73e-11;22!UBERON:0005178;2.91e-07;34!UBERON:0002224;2.91e-07;34!UBERON:0005181;3.61e-07;35!UBERON:0001264;5.42e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,2.61e-13,19;UBERON:0000115,2.61e-13,19;UBERON:0002048,1.55e-11,22;UBERON:0000117,1.55e-11,22;UBERON:0000171,1.55e-11,22;UBERON:0000170,1.55e-11,22;UBERON:0005597,1.55e-11,22;UBERON:0000118,1.55e-11,22;UBERON:0005153,1.91e-10,37;UBERON:0004807,4.02e-09,28;UBERON:0005911,9.63e-09,82;UBERON:0000945,1.04e-08,8;UBERON:0010039,1.04e-08,8;UBERON:0004119,1.30e-08,160;UBERON:0000925,1.30e-08,160;UBERON:0006595,1.30e-08,160;UBERON:0001041,2.95e-08,87;UBERON:0005157,3.23e-08,47;UBERON:0001007,9.94e-08,145;UBERON:0001555,9.94e-08,145;UBERON:0007026,9.94e-08,145;UBERON:0004921,1.17e-07,118;UBERON:0005178,1.49e-07,34;UBERON:0002224,1.49e-07,34;UBERON:0005181,2.42e-07,35;UBERON:0000065,3.98e-07,54;UBERON:0001264,6.50e-07,10;UBERON:0008947,8.86e-07,38;UBERON:0003258,8.86e-07,38 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.44905874525234,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0.18611685633159,0,0,0.252433774244115,0,0.161646056818812,0.355009592516614,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.153461973288062,0.280660094433074,0.256278298511402,0,0,0,0,0,0,0,0,0,0,1.74953878978203,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.656029291399411,0.325378394664303,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0,0,0,0.826424576804891,0.192190067365106,1.40373983744043,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0.748562161632879,0,0.485442086998054,0,0,0.23874448473769,0.296964680832639,0,0.994147647766298,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,0,0,3.22238114416096,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.455173793141999,0.254253650292766,0,1.37897349296586,0,0,0,0,0,0.110579259931225,0,0,0,0,0.153900517007594,0.113942055847001,0,0,0.325942115766024,0,0,0,0,0,0,0,0,0,0,0,0,0.816164040795739,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0.971121518136371,0,0,0,0,0,0,0,1.323967823502,0.941798755221676,1.19472429772959,0.853828638089378,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0.782205530939212,0.400794101257669,0.640358984218058,2.59752492456769,2.73771792592801,0,0.343189995723929,0,0,0.942776138467182,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0.315222829196793,0.157363764404994,0,0,0,0,0,0,0,0,0.326587360109409,0,0.082092520749339,0,0,0,0,0,0,2.73738940614927,1.40963004463334,0.320362237703084,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0.470531639396343,0,0.434763085832475,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0.337884881306145,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0.436838552768056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.322951291263702,0,0,0.589848616738702,0,0,0,0,0.198916222116275,0.225630985047772,0,0,0,0.163771917510097,0,0,0,0,0.126831620387814,0,0,0,0,0.127762427639595,0.535701835878287,0.336283722218824,0.606965604236632,0,0.266107110487916,0,0,0.135939465953663,0.263091094251396,0,0.444925607568277,0.39246546425257,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0.414432328326074,0,0,0,0,0,0.423387050190929,0,0,0,0,0.098150233615243,0.243835849964539,0,0,0,0,0,0,1.42704108933082,0,0,0,0,0.437119121007915,0,0.490296643507811,0.235676547101626,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,4.17255106783675,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0,0.633492505057185,0.101988829741982,0,0,0,0.530450887527676,0.535928260312357,0,0,0,0.23806443146374,0,0.124149428591716,1.34558235096736,0.318235791390825,0,0.217716747896961,0,0.134704106029175,0.215166616178029,0,0,0,0,0.808426818959282,0,0.122241444182866,0,0,0.201273793591026,0 | |||
|short_description=p6@GABRB3 | |||
}} |
Latest revision as of 01:31, 17 September 2015
Short description: | p6@GABRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GABRB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000556166, uc001zbc.2, uc010uae.1_5end |
EntrezGene: | GABRB3 |
HGNC: | 4083 |
UniProt: | G3V3U3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.29e-21 | 3 |
epithelial cell of lung | 2.61e-13 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 2.61e-13 | 19 |
lung epithelium | 2.61e-13 | 19 |
lung | 1.55e-11 | 22 |
respiratory tube | 1.55e-11 | 22 |
respiration organ | 1.55e-11 | 22 |
pair of lungs | 1.55e-11 | 22 |
lung primordium | 1.55e-11 | 22 |
lung bud | 1.55e-11 | 22 |
epithelial bud | 1.91e-10 | 37 |
respiratory system epithelium | 4.02e-09 | 28 |
endo-epithelium | 9.63e-09 | 82 |
stomach | 1.04e-08 | 8 |
food storage organ | 1.04e-08 | 8 |
endoderm-derived structure | 1.30e-08 | 160 |
endoderm | 1.30e-08 | 160 |
presumptive endoderm | 1.30e-08 | 160 |
foregut | 2.95e-08 | 87 |
epithelial fold | 3.23e-08 | 47 |
digestive system | 9.94e-08 | 145 |
digestive tract | 9.94e-08 | 145 |
primitive gut | 9.94e-08 | 145 |
subdivision of digestive tract | 1.17e-07 | 118 |
thoracic cavity element | 1.49e-07 | 34 |
thoracic cavity | 1.49e-07 | 34 |
thoracic segment organ | 2.42e-07 | 35 |
respiratory tract | 3.98e-07 | 54 |
pancreas | 6.50e-07 | 10 |
respiratory primordium | 8.86e-07 | 38 |
endoderm of foregut | 8.86e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
lung cancer | 9.11e-17 | 15 |
respiratory system cancer | 9.66e-16 | 16 |
gastrointestinal system cancer | 1.67e-10 | 14 |