FFCP PHASE1:Hg19::chr2:33824336..33824378,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:33824336..33824378,-
|short_description=p1@FAM98A
|description=CAGE_peak_1_at_FAM98A_5end
|association_with_transcript=0bp_to_ENST00000395190,ENST000004033...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25940 | |EntrezGene=25940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24520 | |HGNC=24520 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NCA5,E9PH82,C9J3G8,B4DT23 | |UniProt=Q8NCA5,E9PH82,C9J3G8,B4DT23 | ||
|association_with_transcript=0bp_to_ENST00000395190,ENST00000403368,ENST00000431950,ENST00000441530,ENST00000498340,NM_015475,uc002rpa.1,uc010yne.1_5end | |||
|cluster_id=chr2:33824336..33824378,- | |||
|coexpression_cluster_id=C4222 | |||
|description=CAGE_peak_1_at_FAM98A_5end | |||
|id=chr2:33824336..33824378,- | |||
|ontology_enrichment_celltype=CL:0000055!9.94e-30!180;CL:0000057!1.15e-21!75;CL:0000680!2.18e-14!57;CL:0000056!2.18e-14!57;CL:0000355!2.18e-14!57;CL:0000187!5.23e-13!54;CL:0000192!9.80e-12!42;CL:0000514!9.80e-12!42;CL:0000222!1.22e-11!119;CL:0000393!1.33e-11!60;CL:0000211!1.33e-11!60;CL:0002620!6.69e-11!23;CL:0000183!2.18e-10!59;CL:0000359!2.35e-10!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.36e-11;23!CL:0000359;1.06e-09;32!CL:0000057;1.91e-09;73!CL:0000192;3.35e-08;43!CL:0000187;1.67e-07;55!CL:0000134;5.21e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.97e-22,76;CL:0000680,4.67e-14,58;CL:0000056,4.67e-14,58;CL:0000355,4.67e-14,58;CL:0000187,1.08e-12,55;CL:0000222,2.02e-11,121;CL:0000192,2.21e-11,43;CL:0000514,2.21e-11,43;CL:0000393,2.43e-11,61;CL:0000211,2.43e-11,61;CL:0002620,6.69e-11,23;CL:0000359,2.35e-10,32 | |||
|ontology_enrichment_development_v019=CL:0000514;3.35e-08;43!CL:0000355;1.74e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.59e-21!83;UBERON:0002329!3.59e-21!83;UBERON:0003077!3.59e-21!83;UBERON:0003059!3.59e-21!83;UBERON:0007282!3.59e-21!83;UBERON:0009618!3.59e-21!83;UBERON:0007285!3.59e-21!83;UBERON:0000475!2.21e-20!365;UBERON:0004290!1.17e-16!70;UBERON:0000119!5.60e-14!312;UBERON:0000486!1.10e-13!82;UBERON:0001134!1.55e-13!61;UBERON:0002036!1.55e-13!61;UBERON:0003082!1.55e-13!61;UBERON:0000483!1.91e-13!309;UBERON:0000477!3.25e-13!286;UBERON:0003102!4.52e-13!95;UBERON:0002385!5.32e-13!63;UBERON:0001015!5.32e-13!63;UBERON:0000383!5.32e-13!63;UBERON:0002049!6.73e-13!79;UBERON:0007798!6.73e-13!79;UBERON:0000481!1.02e-12!347;UBERON:0001637!6.28e-12!42;UBERON:0003509!6.28e-12!42;UBERON:0004572!6.28e-12!42;UBERON:0005256!1.08e-11!143;UBERON:0004872!1.74e-11!84;UBERON:0001981!2.63e-11!60;UBERON:0007500!2.63e-11!60;UBERON:0004537!2.63e-11!60;UBERON:0006965!2.63e-11!60;UBERON:0000055!4.90e-11!69;UBERON:0004573!9.39e-11!33;UBERON:0004571!9.39e-11!33;UBERON:0000490!1.17e-10!138;UBERON:0004111!1.44e-10!241;UBERON:0002199!4.06e-10!45;UBERON:0002416!4.06e-10!45;UBERON:0002100!5.32e-09!216;UBERON:0002097!2.61e-08!40;UBERON:0004535!5.33e-08!110;UBERON:0000033!5.45e-08!123;UBERON:0000025!6.36e-08!194;UBERON:0001009!6.59e-08!113;UBERON:0000947!1.75e-07!21;UBERON:0010191!1.75e-07!21;UBERON:0003104!2.75e-07!238;UBERON:0009142!2.75e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.17e-10;33!UBERON:0004571;8.17e-10;33!UBERON:0001637;5.44e-09;42!UBERON:0003509;5.44e-09;42!UBERON:0004572;5.44e-09;42!UBERON:0000947;1.77e-07;21!UBERON:0010191;1.77e-07;21!UBERON:0002385;2.59e-07;31!UBERON:0001015;2.59e-07;31!UBERON:0000383;2.59e-07;31!UBERON:0002199;6.35e-07;46!UBERON:0002416;6.35e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.05e-16,73;UBERON:0003077,2.06e-16,72;UBERON:0007285,2.06e-16,72;UBERON:0002329,2.45e-16,71;UBERON:0003059,2.45e-16,71;UBERON:0007282,2.45e-16,71;UBERON:0004290,2.45e-16,71;UBERON:0009618,2.45e-16,71;UBERON:0000119,8.33e-15,309;UBERON:0003102,2.02e-14,99;UBERON:0000483,2.95e-14,306;UBERON:0000486,1.90e-13,83;UBERON:0001134,3.07e-13,62;UBERON:0002036,3.07e-13,62;UBERON:0003082,3.07e-13,62;UBERON:0000490,5.46e-13,148;UBERON:0007503,5.82e-13,78;UBERON:0002385,1.01e-12,64;UBERON:0001015,1.01e-12,64;UBERON:0000383,1.01e-12,64;UBERON:0002049,1.64e-12,78;UBERON:0007798,1.64e-12,78;UBERON:0001637,6.28e-12,42;UBERON:0003509,6.28e-12,42;UBERON:0004572,6.28e-12,42;UBERON:0004872,4.00e-11,83;UBERON:0004111,5.40e-11,240;UBERON:0010314,5.80e-11,132;UBERON:0007500,6.48e-11,59;UBERON:0001981,6.48e-11,59;UBERON:0004537,6.48e-11,59;UBERON:0006965,6.48e-11,59;UBERON:0004573,9.39e-11,33;UBERON:0004571,9.39e-11,33;UBERON:0000055,1.17e-10,68;UBERON:0002199,2.15e-10,46;UBERON:0002416,2.15e-10,46;UBERON:0005256,3.38e-10,122;UBERON:0003104,1.40e-09,160;UBERON:0009142,1.40e-09,160;UBERON:0002097,1.40e-08,41;UBERON:0000025,4.01e-08,192;UBERON:0004535,1.03e-07,109;UBERON:0001009,1.26e-07,112;UBERON:0000947,1.75e-07,21;UBERON:0010191,1.75e-07,21 | |||
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| ||
|short_description=p1@FAM98A | |||
}} | }} |
Latest revision as of 00:10, 17 September 2015
Short description: | p1@FAM98A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FAM98A_5end |
Coexpression cluster: | C4222_Fibroblast_Mast_Smooth_mesenchymal_Myoblast_Preadipocyte_basal |
Association with transcript: | 0bp_to_ENST00000395190, ENST00000403368, ENST00000431950, ENST00000441530, ENST00000498340, NM_015475, uc002rpa.1, uc010yne.1_5end |
EntrezGene: | FAM98A |
HGNC: | 24520 |
UniProt: | Q8NCA5E9PH82C9J3G8B4DT23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.97e-22 | 76 |
muscle precursor cell | 4.67e-14 | 58 |
myoblast | 4.67e-14 | 58 |
multi-potent skeletal muscle stem cell | 4.67e-14 | 58 |
muscle cell | 1.08e-12 | 55 |
mesodermal cell | 2.02e-11 | 121 |
smooth muscle cell | 2.21e-11 | 43 |
smooth muscle myoblast | 2.21e-11 | 43 |
electrically responsive cell | 2.43e-11 | 61 |
electrically active cell | 2.43e-11 | 61 |
skin fibroblast | 6.69e-11 | 23 |
vascular associated smooth muscle cell | 2.35e-10 | 32 |