FFCP PHASE1:Hg19::chr1:247582196..247582202,+: Difference between revisions
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|id=chr1:247582196..247582202,+
|short_description=p28@NLRP3
|description=CAGE_peak_28_at_NLRP3_5end
|association_with_transcript=274bp_to_ENST00000474792_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=114548 | |EntrezGene=114548 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16400 | |HGNC=16400 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=274bp_to_ENST00000474792_5end | |||
|cluster_id=chr1:247582196..247582202,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_28_at_NLRP3_5end | |||
|id=chr1:247582196..247582202,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.06e-47!42;CL:0000860!3.47e-44!45;CL:0002194!9.14e-31!63;CL:0000576!9.14e-31!63;CL:0000040!9.14e-31!63;CL:0000559!9.14e-31!63;CL:0002009!8.43e-30!65;CL:0000839!1.26e-27!70;CL:0000557!3.16e-27!71;CL:0000766!2.18e-25!76;CL:0002087!9.39e-19!119;CL:0000763!6.26e-17!112;CL:0000049!6.26e-17!112;CL:0000738!9.00e-16!140;CL:0002031!3.46e-15!124;CL:0000037!1.31e-12!172;CL:0000566!1.31e-12!172;CL:0000988!7.58e-12!182;CL:0002032!4.04e-11!165;CL:0000837!4.04e-11!165;CL:0002393!3.67e-07!9;CL:0002397!3.67e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.30e-18;33!CL:0002057;1.30e-18;33!CL:0000473;1.56e-12;39!CL:0000234;1.56e-12;39!CL:0000576;1.64e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.52e-15,42;CL:0002057,3.52e-15,42;CL:0000473,2.00e-13,48;CL:0000234,2.00e-13,48;CL:0002194,5.86e-11,59;CL:0000576,5.86e-11,59;CL:0000040,5.86e-11,59;CL:0000559,5.86e-11,59;CL:0002009,1.22e-10,61;CL:0000839,6.35e-10,66;CL:0000557,8.58e-10,67;CL:0000766,3.42e-09,72 | |||
|ontology_enrichment_development_v019=CL:0002057;7.43e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.44e-24!80;UBERON:0001474!2.43e-22!86;UBERON:0002390!4.74e-22!102;UBERON:0003061!4.74e-22!102;UBERON:0002193!5.43e-20!112;UBERON:0004765!6.95e-19!101;UBERON:0001434!6.95e-19!101;UBERON:0002405!1.84e-16!115;UBERON:0002146!3.66e-15!1;UBERON:0005623!3.66e-15!1;UBERON:0003081!1.65e-11!216;UBERON:0002204!5.68e-11!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.08e-09,76;UBERON:0001474,3.31e-08,82;UBERON:0004765,1.43e-07,90;UBERON:0002405,2.32e-07,93;UBERON:0002390,4.88e-07,98;UBERON:0003061,4.88e-07,98;UBERON:0001434,6.45e-07,100 | |||
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|short_description=p28@NLRP3 | |||
}} | }} |
Latest revision as of 23:56, 16 September 2015
Short description: | p28@NLRP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_NLRP3_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 274bp_to_ENST00000474792_5end |
EntrezGene: | NLRP3 |
HGNC: | 16400 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.52e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.52e-15 | 42 |
defensive cell | 2.00e-13 | 48 |
phagocyte | 2.00e-13 | 48 |
monopoietic cell | 5.86e-11 | 59 |
monocyte | 5.86e-11 | 59 |
monoblast | 5.86e-11 | 59 |
promonocyte | 5.86e-11 | 59 |
macrophage dendritic cell progenitor | 1.22e-10 | 61 |
myeloid lineage restricted progenitor cell | 6.35e-10 | 66 |
granulocyte monocyte progenitor cell | 8.58e-10 | 67 |
myeloid leukocyte | 3.42e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.08e-09 | 76 |
bone element | 3.31e-08 | 82 |
skeletal element | 1.43e-07 | 90 |
immune system | 2.32e-07 | 93 |
hematopoietic system | 4.88e-07 | 98 |
blood island | 4.88e-07 | 98 |
skeletal system | 6.45e-07 | 100 |