FFCP PHASE1:Hg19::chr16:55513101..55513124,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4313 | |EntrezGene=4313 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7166 | |HGNC=7166 | ||
|TSSclassifier=strong | |||
|UniProt=P08253 | |UniProt=P08253 | ||
|association_with_transcript=20bp_to_NM_004530,uc002ehz.3_5end | |association_with_transcript=20bp_to_NM_004530,uc002ehz.3_5end | ||
|cluster_id=chr16:55513101..55513124,+ | |||
|coexpression_cluster_id=C351 | |coexpression_cluster_id=C351 | ||
|description=CAGE_peak_1_at_MMP2_5end | |description=CAGE_peak_1_at_MMP2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!9.54e-43!180;CL:0000057!3.93e-20!75;CL:0000680!1.29e-18!57;CL:0000056!1.29e-18!57;CL:0000355!1.29e-18!57;CL:0000183!7.79e-18!59;CL:0000187!2.41e-17!54;CL:0000393!1.59e-15!60;CL:0000211!1.59e-15!60;CL:0000192!1.70e-15!42;CL:0000514!1.70e-15!42;CL:0000222!7.32e-15!119;CL:0000359!2.47e-12!32;CL:0000220!5.22e-10!246;CL:0002321!6.62e-10!248;CL:0002620!3.46e-08!23;CL:0002334!2.01e-07!12;CL:0002371!5.13e-07!591;CL:0000144!9.77e-07!625 | |ontology_enrichment_celltype=CL:0000055!9.54e-43!180;CL:0000057!3.93e-20!75;CL:0000680!1.29e-18!57;CL:0000056!1.29e-18!57;CL:0000355!1.29e-18!57;CL:0000183!7.79e-18!59;CL:0000187!2.41e-17!54;CL:0000393!1.59e-15!60;CL:0000211!1.59e-15!60;CL:0000192!1.70e-15!42;CL:0000514!1.70e-15!42;CL:0000222!7.32e-15!119;CL:0000359!2.47e-12!32;CL:0000220!5.22e-10!246;CL:0002321!6.62e-10!248;CL:0002620!3.46e-08!23;CL:0002334!2.01e-07!12;CL:0002371!5.13e-07!591;CL:0000144!9.77e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.35e-12;32!CL:0000192;7.95e-12;43!CL:0000187;6.77e-10;55!CL:0000134;5.23e-09;55!CL:0000723;1.07e-08;61!CL:0000048;1.29e-08;58!CL:0000393;1.67e-08;61!CL:0000211;1.67e-08;61!CL:0000057;2.39e-08;73!CL:0002620;2.83e-08;23!CL:0002320;1.26e-07;188!CL:0002334;1.67e-07;12 | |ontology_enrichment_celltype_v019=CL:0000359;6.35e-12;32!CL:0000192;7.95e-12;43!CL:0000187;6.77e-10;55!CL:0000134;5.23e-09;55!CL:0000723;1.07e-08;61!CL:0000048;1.29e-08;58!CL:0000393;1.67e-08;61!CL:0000211;1.67e-08;61!CL:0000057;2.39e-08;73!CL:0002620;2.83e-08;23!CL:0002320;1.26e-07;188!CL:0002334;1.67e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.60e-21,76;CL:0000680,2.34e-19,58;CL:0000056,2.34e-19,58;CL:0000355,2.34e-19,58;CL:0000187,4.61e-18,55;CL:0000393,3.40e-16,61;CL:0000211,3.40e-16,61;CL:0000192,3.41e-16,43;CL:0000514,3.41e-16,43;CL:0000222,2.24e-15,121;CL:0000359,1.75e-12,32;CL:0002321,1.18e-09,250;CL:0002620,2.81e-08,23;CL:0002334,1.67e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;7.95e-12;43!CL:0000355;3.20e-10;58 | |ontology_enrichment_development_v019=CL:0000514;7.95e-12;43!CL:0000355;3.20e-10;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.14e-21!83;UBERON:0002329!2.14e-21!83;UBERON:0003077!2.14e-21!83;UBERON:0003059!2.14e-21!83;UBERON:0007282!2.14e-21!83;UBERON:0009618!2.14e-21!83;UBERON:0007285!2.14e-21!83;UBERON:0004290!2.01e-20!70;UBERON:0000486!2.33e-20!82;UBERON:0004872!8.18e-20!84;UBERON:0002385!3.35e-19!63;UBERON:0001015!3.35e-19!63;UBERON:0000383!3.35e-19!63;UBERON:0001134!4.55e-19!61;UBERON:0002036!4.55e-19!61;UBERON:0003082!4.55e-19!61;UBERON:0002049!3.28e-16!79;UBERON:0007798!3.28e-16!79;UBERON:0001981!3.86e-16!60;UBERON:0007500!3.86e-16!60;UBERON:0004537!3.86e-16!60;UBERON:0006965!3.86e-16!60;UBERON:0005256!6.13e-16!143;UBERON:0001637!3.48e-15!42;UBERON:0003509!3.48e-15!42;UBERON:0004572!3.48e-15!42;UBERON:0000055!2.32e-14!69;UBERON:0004573!1.79e-13!33;UBERON:0004571!1.79e-13!33;UBERON:0003914!2.78e-13!118;UBERON:0000475!3.43e-13!365;UBERON:0000468!1.71e-12!659;UBERON:0000490!1.74e-12!138;UBERON:0001009!4.98e-12!113;UBERON:0002100!8.46e-12!216;UBERON:0004535!1.04e-11!110;UBERON:0003102!7.67e-10!95;UBERON:0000119!1.46e-09!312;UBERON:0000483!1.86e-09!309;UBERON:0000947!2.03e-09!21;UBERON:0010191!2.03e-09!21;UBERON:0002199!3.08e-09!45;UBERON:0002416!3.08e-09!45;UBERON:0000467!3.71e-09!625;UBERON:0000480!6.44e-09!626;UBERON:0007100!3.64e-08!27;UBERON:0000948!5.06e-08!24;UBERON:0005498!5.06e-08!24;UBERON:0004140!5.06e-08!24;UBERON:0009881!5.06e-08!24;UBERON:0004141!5.06e-08!24;UBERON:0003084!5.06e-08!24;UBERON:0007005!5.06e-08!24;UBERON:0004139!5.06e-08!24;UBERON:0004291!5.06e-08!24;UBERON:0002097!2.66e-07!40;UBERON:0001013!3.14e-07!14;UBERON:0001135!3.30e-07!15;UBERON:0000481!8.61e-07!347 | |ontology_enrichment_uberon=UBERON:0000914!2.14e-21!83;UBERON:0002329!2.14e-21!83;UBERON:0003077!2.14e-21!83;UBERON:0003059!2.14e-21!83;UBERON:0007282!2.14e-21!83;UBERON:0009618!2.14e-21!83;UBERON:0007285!2.14e-21!83;UBERON:0004290!2.01e-20!70;UBERON:0000486!2.33e-20!82;UBERON:0004872!8.18e-20!84;UBERON:0002385!3.35e-19!63;UBERON:0001015!3.35e-19!63;UBERON:0000383!3.35e-19!63;UBERON:0001134!4.55e-19!61;UBERON:0002036!4.55e-19!61;UBERON:0003082!4.55e-19!61;UBERON:0002049!3.28e-16!79;UBERON:0007798!3.28e-16!79;UBERON:0001981!3.86e-16!60;UBERON:0007500!3.86e-16!60;UBERON:0004537!3.86e-16!60;UBERON:0006965!3.86e-16!60;UBERON:0005256!6.13e-16!143;UBERON:0001637!3.48e-15!42;UBERON:0003509!3.48e-15!42;UBERON:0004572!3.48e-15!42;UBERON:0000055!2.32e-14!69;UBERON:0004573!1.79e-13!33;UBERON:0004571!1.79e-13!33;UBERON:0003914!2.78e-13!118;UBERON:0000475!3.43e-13!365;UBERON:0000468!1.71e-12!659;UBERON:0000490!1.74e-12!138;UBERON:0001009!4.98e-12!113;UBERON:0002100!8.46e-12!216;UBERON:0004535!1.04e-11!110;UBERON:0003102!7.67e-10!95;UBERON:0000119!1.46e-09!312;UBERON:0000483!1.86e-09!309;UBERON:0000947!2.03e-09!21;UBERON:0010191!2.03e-09!21;UBERON:0002199!3.08e-09!45;UBERON:0002416!3.08e-09!45;UBERON:0000467!3.71e-09!625;UBERON:0000480!6.44e-09!626;UBERON:0007100!3.64e-08!27;UBERON:0000948!5.06e-08!24;UBERON:0005498!5.06e-08!24;UBERON:0004140!5.06e-08!24;UBERON:0009881!5.06e-08!24;UBERON:0004141!5.06e-08!24;UBERON:0003084!5.06e-08!24;UBERON:0007005!5.06e-08!24;UBERON:0004139!5.06e-08!24;UBERON:0004291!5.06e-08!24;UBERON:0002097!2.66e-07!40;UBERON:0001013!3.14e-07!14;UBERON:0001135!3.30e-07!15;UBERON:0000481!8.61e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.42e-12;33!UBERON:0004571;1.42e-12;33!UBERON:0001637;2.12e-11;42!UBERON:0003509;2.12e-11;42!UBERON:0004572;2.12e-11;42!UBERON:0002385;7.75e-10;31!UBERON:0001015;7.75e-10;31!UBERON:0000383;7.75e-10;31!UBERON:0000947;1.58e-09;21!UBERON:0010191;1.58e-09;21!UBERON:0007500;1.93e-08;56!UBERON:0001981;1.93e-08;56!UBERON:0004537;1.93e-08;56!UBERON:0002384;2.37e-08;198!UBERON:0007100;8.38e-08;25!UBERON:0000948;1.15e-07;22!UBERON:0001013;2.64e-07;14!UBERON:0001135;2.70e-07;15!UBERON:0002204;6.39e-07;70!UBERON:0000055;9.69e-07;65 | |ontology_enrichment_uberon_v019=UBERON:0004573;1.42e-12;33!UBERON:0004571;1.42e-12;33!UBERON:0001637;2.12e-11;42!UBERON:0003509;2.12e-11;42!UBERON:0004572;2.12e-11;42!UBERON:0002385;7.75e-10;31!UBERON:0001015;7.75e-10;31!UBERON:0000383;7.75e-10;31!UBERON:0000947;1.58e-09;21!UBERON:0010191;1.58e-09;21!UBERON:0007500;1.93e-08;56!UBERON:0001981;1.93e-08;56!UBERON:0004537;1.93e-08;56!UBERON:0002384;2.37e-08;198!UBERON:0007100;8.38e-08;25!UBERON:0000948;1.15e-07;22!UBERON:0001013;2.64e-07;14!UBERON:0001135;2.70e-07;15!UBERON:0002204;6.39e-07;70!UBERON:0000055;9.69e-07;65 | ||
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| ||
|short_description=p1@MMP2 | |short_description=p1@MMP2 | ||
}} | }} |
Latest revision as of 23:50, 16 September 2015
Short description: | p1@MMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MMP2_5end |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | 20bp_to_NM_004530, uc002ehz.3_5end |
EntrezGene: | MMP2 |
HGNC: | 7166 |
UniProt: | P08253 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.60e-21 | 76 |
muscle precursor cell | 2.34e-19 | 58 |
myoblast | 2.34e-19 | 58 |
multi-potent skeletal muscle stem cell | 2.34e-19 | 58 |
muscle cell | 4.61e-18 | 55 |
electrically responsive cell | 3.40e-16 | 61 |
electrically active cell | 3.40e-16 | 61 |
smooth muscle cell | 3.41e-16 | 43 |
smooth muscle myoblast | 3.41e-16 | 43 |
mesodermal cell | 2.24e-15 | 121 |
vascular associated smooth muscle cell | 1.75e-12 | 32 |
embryonic cell | 1.18e-09 | 250 |
skin fibroblast | 2.81e-08 | 23 |
preadipocyte | 1.67e-07 | 12 |