FFCP PHASE1:Hg19::chr13:28541455..28541475,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1806 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000548877_5end | |||
|cluster_id=chr13:28541455..28541475,- | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_7_at_CDX2_5end | |||
|id=chr13:28541455..28541475,- | |||
|ontology_enrichment_celltype=CL:0000319!2.75e-12!1;CL:0002563!3.27e-12!4;CL:0000453!1.01e-09!5;CL:0002253!4.56e-07!2;CL:0002535!4.83e-07!2;CL:0000159!9.02e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002253;4.32e-26;2!CL:0002535;7.14e-26;2!CL:0002563;8.81e-14;4!CL:0000083;1.13e-13;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,4.32e-26,2;CL:0002535,5.56e-26,2;CL:0002563,8.82e-14,4;CL:0000083,1.29e-13,4;CL:0000223,1.42e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.13e-07;31 | |||
|ontology_enrichment_disease=DOID:3030!2.75e-12!1;DOID:299!4.16e-11!25;DOID:3119!9.24e-08!14;DOID:4929!5.41e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:4929;7.14e-26;2!DOID:1793;1.13e-13;4!DOID:4362;3.26e-11;5!DOID:170;1.44e-09;6!DOID:299;5.27e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,9.18e-26,2;DOID:1793,1.29e-13,4;DOID:4362,2.94e-11,5;DOID:170,1.57e-09,6;DOID:299,5.49e-09,25;DOID:305,2.62e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000160!1.49e-24!27;UBERON:0005409!7.69e-24!35;UBERON:0001052!2.47e-12!4;UBERON:0001242!3.27e-12!4;UBERON:0001262!3.27e-12!4;UBERON:0004786!3.27e-12!4;UBERON:0004808!3.27e-12!4;UBERON:0001277!3.27e-12!4;UBERON:0002108!3.96e-12!14;UBERON:0004907!4.76e-10!5;UBERON:0003350!5.95e-10!5;UBERON:0000059!8.34e-10!11;UBERON:0004921!7.98e-09!129;UBERON:0004185!7.98e-09!129;UBERON:0001007!1.52e-08!155;UBERON:0001555!1.52e-08!155;UBERON:0007026!1.52e-08!155;UBERON:0002114!2.19e-08!12;UBERON:0004119!1.07e-07!169;UBERON:0000925!1.07e-07!169;UBERON:0006595!1.07e-07!169;UBERON:0006955!4.83e-07!2;UBERON:0004801!4.83e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;7.14e-26;2!UBERON:0004801;7.14e-26;2!UBERON:0001052;8.81e-14;4!UBERON:0001242;8.81e-14;4!UBERON:0001262;8.81e-14;4!UBERON:0004786;8.81e-14;4!UBERON:0004808;8.81e-14;4!UBERON:0001277;8.81e-14;4!UBERON:0004907;2.66e-11;5!UBERON:0000002;1.44e-09;6!UBERON:0001560;1.44e-09;6!UBERON:0000485;1.89e-08;7!UBERON:0003929;1.89e-08;7!UBERON:0003350;1.49e-07;8!UBERON:0001155;7.48e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,5.56e-26,2;UBERON:0004801,5.56e-26,2;UBERON:0001052,8.82e-14,4;UBERON:0001242,8.82e-14,4;UBERON:0001262,8.82e-14,4;UBERON:0004786,8.82e-14,4;UBERON:0004808,8.82e-14,4;UBERON:0001277,8.82e-14,4;UBERON:0004907,2.66e-11,5;UBERON:0000002,1.32e-09,6;UBERON:0001560,1.32e-09,6;UBERON:0003350,1.49e-07,8;UBERON:0001155,7.48e-07,9;UBERON:0000485,7.48e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25966373927138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,115.335144982535,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398594520940089,0.163565394255844,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0,0,0,0.33883824611688,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07790242527904,0,0,0,0,0,0 | |||
|short_description=p7@CDX2 | |||
}} |
Latest revision as of 23:34, 16 September 2015
Short description: | p7@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | 0bp_to_ENST00000548877_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 4.32e-26 | 2 |
epithelial cell of cervix | 5.56e-26 | 2 |
intestinal epithelial cell | 8.82e-14 | 4 |
epithelial cell of pancreas | 1.29e-13 | 4 |
endodermal cell | 1.42e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 5.56e-26 | 2 |
cervix epithelium | 5.56e-26 | 2 |
rectum | 8.82e-14 | 4 |
intestinal mucosa | 8.82e-14 | 4 |
wall of intestine | 8.82e-14 | 4 |
gastrointestinal system mucosa | 8.82e-14 | 4 |
gastrointestinal system epithelium | 8.82e-14 | 4 |
intestinal epithelium | 8.82e-14 | 4 |
lower digestive tract | 2.66e-11 | 5 |
uterine cervix | 1.32e-09 | 6 |
neck of organ | 1.32e-09 | 6 |
epithelium of mucosa | 1.49e-07 | 8 |
colon | 7.48e-07 | 9 |
simple columnar epithelium | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 9.18e-26 | 2 |
pancreatic cancer | 1.29e-13 | 4 |
cervical cancer | 2.94e-11 | 5 |
endocrine gland cancer | 1.57e-09 | 6 |
adenocarcinoma | 5.49e-09 | 25 |
carcinoma | 2.62e-08 | 106 |