FFCP PHASE1:Hg19::chr11:15989432..15989436,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:15989432..15989436,-
|short_description=p17@SOX6
|description=CAGE_peak_17_at_SOX6_5end
|association_with_transcript=404bp_to_AK021785_5end
|EntrezGene=5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55553 | |EntrezGene=55553 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16421 | |HGNC=16421 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=404bp_to_AK021785_5end | |||
|cluster_id=chr11:15989432..15989436,- | |||
|coexpression_cluster_id=C90 | |||
|description=CAGE_peak_17_at_SOX6_5end | |||
|id=chr11:15989432..15989436,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;3.49e-23;2!CL:0000764;3.49e-23;2!CL:0000558;3.49e-23;2!CL:0002097;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,1.78e-23,2;CL:0000765,1.78e-23,2;CL:0000050,1.78e-23,2;CL:0000038,1.78e-23,2;CL:0000558,1.78e-23,2;CL:0000547,1.78e-23,2;CL:0000549,1.78e-23,2;CL:0000550,1.78e-23,2;CL:0000552,1.78e-23,2;CL:0002097,9.54e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;2.51e-18;10!DOID:3095;1.88e-08;22!DOID:2994;1.88e-08;22!DOID:1909;9.01e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.40e-18,10;DOID:3095,1.84e-08,22;DOID:2994,1.84e-08,22;DOID:1909,7.61e-07,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002346;3.02e-45;4!UBERON:0000923;3.02e-45;4!UBERON:0010316;3.02e-45;4!UBERON:0005291;3.02e-45;4!UBERON:0002050;2.73e-36;5!UBERON:0005423;2.73e-36;5 | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p17@SOX6 | |||
}} | }} |
Latest revision as of 22:45, 16 September 2015
Short description: | p17@SOX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_SOX6_5end |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | 404bp_to_AK021785_5end |
EntrezGene: | SOX6 |
HGNC: | 16421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 1.78e-23 | 2 |
erythroblast | 1.78e-23 | 2 |
megakaryocyte-erythroid progenitor cell | 1.78e-23 | 2 |
erythroid progenitor cell | 1.78e-23 | 2 |
reticulocyte | 1.78e-23 | 2 |
proerythroblast | 1.78e-23 | 2 |
basophilic erythroblast | 1.78e-23 | 2 |
polychromatophilic erythroblast | 1.78e-23 | 2 |
orthochromatic erythroblast | 1.78e-23 | 2 |
cortical cell of adrenal gland | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.40e-18 | 10 |
germ cell and embryonal cancer | 1.84e-08 | 22 |
germ cell cancer | 1.84e-08 | 22 |
melanoma | 7.61e-07 | 2 |