FFCP PHASE1:Hg19::chr2:30144471..30144482,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=238 | |EntrezGene=238 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=427 | |HGNC=427 | ||
|TSSclassifier=strong | |||
|UniProt=B6D4Y2,Q9UM73 | |UniProt=B6D4Y2,Q9UM73 | ||
|association_with_transcript=0bp_to_NM_004304_5end | |association_with_transcript=0bp_to_NM_004304_5end | ||
|cluster_id=chr2:30144471..30144482,- | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_2_at_ALK_5end | |description=CAGE_peak_2_at_ALK_5end | ||
|id=chr2:30144471..30144482,- | |id=chr2:30144471..30144482,- | ||
|ontology_enrichment_celltype=CL:0002605!2.21e-07!3 | |ontology_enrichment_celltype=CL:0002605!2.21e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000123;4.37e-23;2!CL:0000242;4.37e-23;2!CL:0000333;6.59e-21;5!CL:0002605;1.64e-15;3!CL:0002319;3.56e-10;25!CL:0000312;8.12e-10;5!CL:0000095;1.67e-09;17!CL:0000240;2.52e-08;6!CL:0000311;2.52e-08;6!CL:0000079;2.52e-08;6!CL:0000237;2.52e-08;6!CL:0002321;2.46e-07;15!CL:0000128;3.67e-07;7!CL:0000126;3.67e-07;7!CL:0000127;3.67e-07;7!CL:0000047;5.41e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.12e-23,2;CL:0002605,1.32e-15,3;CL:0000333,4.59e-12,41;CL:0000133,7.94e-11,59;CL:0002319,3.17e-10,25;CL:0000312,7.11e-10,5;CL:0000095,1.46e-09,17;CL:0000123,1.46e-09,17;CL:0000221,9.16e-09,72;CL:0000240,2.25e-08,6;CL:0000311,2.25e-08,6;CL:0000079,2.25e-08,6;CL:0000237,2.25e-08,6;CL:0000036,2.25e-08,6;CL:0000357,2.25e-08,6;CL:0000114,2.25e-08,6;CL:0000128,3.35e-07,7;CL:0000126,3.35e-07,7;CL:0000127,3.35e-07,7;CL:0002453,3.35e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000357;2.52e-08;6!CL:0000114;2.52e-08;6!CL:0000133;7.14e-08;59 | |||
|ontology_enrichment_disease=DOID:171!1.08e-15!10;DOID:3095!1.26e-10!22;DOID:2994!1.26e-10!22;DOID:169!2.42e-09!6 | |ontology_enrichment_disease=DOID:171!1.08e-15!10;DOID:3095!1.26e-10!22;DOID:2994!1.26e-10!22;DOID:169!2.42e-09!6 | ||
|ontology_enrichment_disease_v019=DOID:171;3.74e-18;10!DOID:169;1.56e-17;6!DOID:3095;2.24e-08;22!DOID:2994;2.24e-08;22!DOID:4231;9.27e-07;2!DOID:3193;9.27e-07;2!DOID:962;9.27e-07;2!DOID:1907;9.27e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.09e-18,10;DOID:169,1.61e-17,6;DOID:3095,2.33e-08,22;DOID:2994,2.33e-08,22;DOID:4231,7.61e-07,2;DOID:1907,7.61e-07,2;DOID:3193,9.54e-07,2;DOID:962,9.54e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.13e-47!57;UBERON:0005068!3.13e-47!57;UBERON:0006241!3.13e-47!57;UBERON:0007135!3.13e-47!57;UBERON:0002780!1.35e-46!41;UBERON:0001890!1.35e-46!41;UBERON:0006240!1.35e-46!41;UBERON:0003080!2.91e-45!42;UBERON:0001893!3.04e-43!34;UBERON:0002791!2.32e-41!33;UBERON:0002020!3.96e-40!34;UBERON:0003528!3.96e-40!34;UBERON:0001869!5.01e-40!32;UBERON:0002346!4.51e-39!90;UBERON:0000073!9.02e-39!94;UBERON:0001016!9.02e-39!94;UBERON:0002616!6.83e-38!59;UBERON:0003056!5.06e-36!61;UBERON:0001017!5.48e-36!82;UBERON:0005743!1.46e-35!86;UBERON:0000955!5.42e-34!69;UBERON:0006238!5.42e-34!69;UBERON:0003075!6.47e-34!86;UBERON:0007284!6.47e-34!86;UBERON:0000956!1.76e-31!25;UBERON:0000203!1.76e-31!25;UBERON:0002619!5.31e-26!22;UBERON:0007023!1.71e-23!115;UBERON:0000924!5.09e-23!173;UBERON:0006601!5.09e-23!173;UBERON:0001950!2.20e-22!20;UBERON:0004121!1.22e-19!169;UBERON:0000153!3.43e-19!129;UBERON:0007811!3.43e-19!129;UBERON:0000033!1.52e-18!123;UBERON:0000200!3.77e-12!6;UBERON:0002420!3.94e-10!9;UBERON:0007245!3.94e-10!9;UBERON:0010009!3.94e-10!9;UBERON:0010011!3.94e-10!9;UBERON:0000454!3.94e-10!9;UBERON:0002308!4.99e-10!9;UBERON:0000125!4.99e-10!9;UBERON:0009663!9.63e-10!7;UBERON:0000025!3.63e-09!194;UBERON:0001871!4.45e-09!7;UBERON:0000013!8.02e-08!5;UBERON:0002410!8.02e-08!5;UBERON:0000064!1.38e-07!219;UBERON:0000349!2.49e-07!5;UBERON:0002021!5.64e-07!5;UBERON:0002240!8.77e-07!3 | |ontology_enrichment_uberon=UBERON:0001049!3.13e-47!57;UBERON:0005068!3.13e-47!57;UBERON:0006241!3.13e-47!57;UBERON:0007135!3.13e-47!57;UBERON:0002780!1.35e-46!41;UBERON:0001890!1.35e-46!41;UBERON:0006240!1.35e-46!41;UBERON:0003080!2.91e-45!42;UBERON:0001893!3.04e-43!34;UBERON:0002791!2.32e-41!33;UBERON:0002020!3.96e-40!34;UBERON:0003528!3.96e-40!34;UBERON:0001869!5.01e-40!32;UBERON:0002346!4.51e-39!90;UBERON:0000073!9.02e-39!94;UBERON:0001016!9.02e-39!94;UBERON:0002616!6.83e-38!59;UBERON:0003056!5.06e-36!61;UBERON:0001017!5.48e-36!82;UBERON:0005743!1.46e-35!86;UBERON:0000955!5.42e-34!69;UBERON:0006238!5.42e-34!69;UBERON:0003075!6.47e-34!86;UBERON:0007284!6.47e-34!86;UBERON:0000956!1.76e-31!25;UBERON:0000203!1.76e-31!25;UBERON:0002619!5.31e-26!22;UBERON:0007023!1.71e-23!115;UBERON:0000924!5.09e-23!173;UBERON:0006601!5.09e-23!173;UBERON:0001950!2.20e-22!20;UBERON:0004121!1.22e-19!169;UBERON:0000153!3.43e-19!129;UBERON:0007811!3.43e-19!129;UBERON:0000033!1.52e-18!123;UBERON:0000200!3.77e-12!6;UBERON:0002420!3.94e-10!9;UBERON:0007245!3.94e-10!9;UBERON:0010009!3.94e-10!9;UBERON:0010011!3.94e-10!9;UBERON:0000454!3.94e-10!9;UBERON:0002308!4.99e-10!9;UBERON:0000125!4.99e-10!9;UBERON:0009663!9.63e-10!7;UBERON:0000025!3.63e-09!194;UBERON:0001871!4.45e-09!7;UBERON:0000013!8.02e-08!5;UBERON:0002410!8.02e-08!5;UBERON:0000064!1.38e-07!219;UBERON:0000349!2.49e-07!5;UBERON:0002021!5.64e-07!5;UBERON:0002240!8.77e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000007;2.95e-23;2!UBERON:0000013;6.59e-21;5!UBERON:0002410;6.59e-21;5!UBERON:0002022;2.91e-12;1!UBERON:0003296;3.97e-12;4!UBERON:0010133;3.97e-12;4!UBERON:0000010;6.90e-12;8!UBERON:0000956;2.01e-10;25!UBERON:0000203;2.01e-10;25!UBERON:0002780;2.30e-09;41!UBERON:0001890;2.30e-09;41!UBERON:0000073;5.13e-08;53!UBERON:0002616;5.13e-08;53!UBERON:0002791;7.92e-08;32!UBERON:0001869;7.92e-08;32!UBERON:0001893;2.26e-07;34!UBERON:0001894;2.64e-07;7!UBERON:0003528;2.66e-07;34!UBERON:0002020;2.66e-07;34!UBERON:0003714;9.27e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,1.78e-23,2;UBERON:0000013,6.82e-21,5;UBERON:0002410,6.82e-21,5;UBERON:0001016,4.95e-13,89;UBERON:0003296,3.09e-12,4;UBERON:0010133,3.09e-12,4;UBERON:0002780,3.83e-12,41;UBERON:0001890,3.83e-12,41;UBERON:0003080,3.83e-12,41;UBERON:0006240,3.83e-12,41;UBERON:0002022,3.85e-12,1;UBERON:0000010,7.03e-12,8;UBERON:0004121,1.76e-10,171;UBERON:0000924,1.76e-10,171;UBERON:0006601,1.76e-10,171;UBERON:0000956,2.34e-10,25;UBERON:0000203,2.34e-10,25;UBERON:0000073,2.65e-09,53;UBERON:0002616,2.65e-09,53;UBERON:0001049,8.84e-09,56;UBERON:0005068,8.84e-09,56;UBERON:0006241,8.84e-09,56;UBERON:0007135,8.84e-09,56;UBERON:0002791,3.86e-08,32;UBERON:0001869,3.86e-08,32;UBERON:0003056,5.10e-08,61;UBERON:0003528,1.14e-07,34;UBERON:0002020,1.14e-07,34;UBERON:0001893,1.14e-07,34;UBERON:0001017,1.37e-07,81;UBERON:0001894,2.30e-07,7;UBERON:0006222,2.30e-07,7;UBERON:0010371,2.36e-07,104;UBERON:0002346,3.73e-07,86;UBERON:0000955,5.02e-07,68;UBERON:0006238,5.02e-07,68;UBERON:0003714,9.54e-07,2 | |||
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| ||
|short_description=p2@ALK | |short_description=p2@ALK | ||
}} | }} |
Latest revision as of 21:38, 16 September 2015
Short description: | p2@ALK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ALK_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 0bp_to_NM_004304_5end |
EntrezGene: | ALK |
HGNC: | 427 |
UniProt: | B6D4Y2Q9UM73 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.12e-23 | 2 |
astrocyte of the cerebral cortex | 1.32e-15 | 3 |
migratory neural crest cell | 4.59e-12 | 41 |
neurectodermal cell | 7.94e-11 | 59 |
neural cell | 3.17e-10 | 25 |
keratinocyte | 7.11e-10 | 5 |
neuron associated cell | 1.46e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 1.46e-09 | 17 |
ectodermal cell | 9.16e-09 | 72 |
stratified squamous epithelial cell | 2.25e-08 | 6 |
keratin accumulating cell | 2.25e-08 | 6 |
stratified epithelial cell | 2.25e-08 | 6 |
keratinizing barrier epithelial cell | 2.25e-08 | 6 |
epithelial fate stem cell | 2.25e-08 | 6 |
stratified epithelial stem cell | 2.25e-08 | 6 |
surface ectodermal cell | 2.25e-08 | 6 |
oligodendrocyte | 3.35e-07 | 7 |
macroglial cell | 3.35e-07 | 7 |
astrocyte | 3.35e-07 | 7 |
oligodendrocyte precursor cell | 3.35e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.09e-18 | 10 |
neuroendocrine tumor | 1.61e-17 | 6 |
germ cell and embryonal cancer | 2.33e-08 | 22 |
germ cell cancer | 2.33e-08 | 22 |
histiocytoma | 7.61e-07 | 2 |
malignant fibroxanthoma | 7.61e-07 | 2 |
peripheral nerve sheath neoplasm | 9.54e-07 | 2 |
neurofibroma | 9.54e-07 | 2 |